Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20malanga_20[genbank_20GCA_5F001599215.1_202016-03- 01] 44 sequences; 16,719,687 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5 221 2e-52 seq10 147 3e-30 seq6 136 6e-27 seq1 129 9e-25 seq4 111 2e-19 >seq5 Length=1624186 Score = 221 bits (244), Expect = 2e-52 Identities = 578/870 (66%), Gaps = 21/870 (2%) Strand=Plus/Minus Query 17843 TCATTTTTATCAAAATTAGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTC 17902 |||||| |||| ||| | |||| || ||| ||| |||||||||| ||||| ||| Sbjct 610716 TCATTTCCATCACC-TTAACCTTTTGATAGTCTGAAACTCTTTTCTCGAAAAAATTCGTC 610658 Query 17903 TTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATTAGTG--GTTTTATAATATT 17960 |||||| |||| || || | ||| |||||||| ||||| | ||| |||| | || Sbjct 610657 TTTCCTGCCAAGGAGATGTTTTCCATGAAATCAAAAGGATTGTTCACGTTATATACT-TT 610599 Query 17961 TTTCTTGTATTA--ATTCGTATAATAATCTATCTGCTACAAATTCGACATATTGTGACAT 18018 || || | | || | ||| || | || || ||||| || |||||||| ||| Sbjct 610598 ATTGTTACCTAAGGATAC---TAACAACCGGTCGGCAACAAACTCCACATATTGGTTCAT 610542 Query 18019 CAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTC 18078 ||| | |||||| |||| | | || ||||| ||| | | ||| || || Sbjct 610541 TAAAGTGGCATTCATTCCTAACAAGGATACAGAAAGAGCGTCATCGAAATATTTCTTTTC 610482 Query 18079 TATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTAT 18138 ||| |||||| || | || || ||| || | ||| |||||| || | Sbjct 610481 TATAGCAACAGCTTCGGTGATGATTTTTTCAACAATCTTTTTATCCAATTTGTTTTGCAA 610422 Query 18139 GTGATTATAATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAA 18198 ||| | || |||| ||||||||||||||| || || ||||| || ||| || || Sbjct 610421 ATGAG---AGTACAATAGACACGCAAAATCAGTATGCAAGCCTTCGTCCCTGCTAATCAA 610365 Query 18199 TTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGC 18258 |||||| |||||| || || ||||| | |||||||||||| | |||||| || || || Sbjct 610364 CTCGTTAGAAAACGTCAAACCTGGCATGAGACCTCTTTTTTTCAACCAAAAGATTGAAGC 610305 Query 18259 GAAACTA-CTAGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAA 18317 |||| | | || || ||||| || || ||| || || || | | | ||| |||| Sbjct 610304 -AAACGATCCTGAGAAAAATATTCCTTCTACGGCAGCAAAGGCAACAAGACGTTCTGCAA 610246 Query 18318 AACTGTATTTATTGCTCAGT-ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACAC 18376 | || | | || | ||||| | ||||| || ||| || | | Sbjct 610245 ACAAAGCGTTGTCG-TCGTTGATCCAACGTAAAGCCCAGTCAGCTTTCTCTTTGATGCTC 610187 Query 18377 GGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTG 18436 |||||| | || || ||||| ||||| ||| ||||| |||||| |||||||| Sbjct 610186 GGTATAGTTTCGATGGCATTGAACAAGAATTCTGCCTCTTTCTGATCTTTGATATAAGTA 610127 Query 18437 TCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAA 18496 || || | || ||||| | || ||||||||| ||||||| ||| ||||| | ||| Sbjct 610126 TCTATAAGTAAGGAATAGGTCTCGGAATGTATGTTTTCCATCATTATTTGAAATCCATAG 610067 Query 18497 AACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTA 18556 || || | |||||| ||| | ||| || |||| ||| || | ||| ||||| Sbjct 610066 AAGCATTTTGCCTCGCTCACTTGCACCTCTGTAGAAAAGTTTTGCACTAGATTTTCATTG 610007 Query 18557 ACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATT 18615 || || |||||| | || ||||| || ||||| | | | ||||||| ||| Sbjct 610006 ACAATGCCGTCACTGGCAGCAAAAAACGCTAAAAC-TCTGGATATGAAATACCGCTCACC 609948 Query 18616 ATCCTTGAGATTG---TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGT 18672 ||| || || ||| ||||| |||| |||||||||| || ||||| ||||| | || Sbjct 609947 ATCGTTAAGCTTGTAATTCCAATCATATATATCTTTTCCTAAATCAATCTCTTCGGCAGT 609888 Query 18673 CCAAAAAGATGATTCGGCCTGTTTGTACAT 18702 ||| ||||||| || |||| ||| ||||| Sbjct 609887 CCAGAAAGATGCCTCTGCCTTTTTATACAT 609858 >seq10 Length=744508 Score = 147 bits (162), Expect = 3e-30 Identities = 368/556 (66%), Gaps = 7/556 (1%) Strand=Plus/Plus Query 18152 AATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAAC 18211 || || || ||||| || ||||| |||||||| |||||| | || ||||||||| |||| Sbjct 45914 AACAAGCAAGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAGATCAATTCGTTAGAAAAC 45973 Query 18212 GTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAA 18271 || || || ||||| | |||||||||||| | ||| || || || || ||| | || Sbjct 45974 GTCAAGCCCGGCATCAAACCTCTTTTTTTCAACCAGAAAATAGAAGCAAAAGAGCCCGAG 46033 Query 18272 AAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT 18330 ||||| || || ||||| ||| || || || | |||||||||||||| | | | Sbjct 46034 AAGAAAATGCCTTCAACAGCA-GCAAAGGCAACCAATCTTTCAGCAAACAAGGCCTGGTC 46092 Query 18331 GCTCAGT-ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTA 18389 | || | |||||| | ||||| || | | || || || |||| | Sbjct 46093 G-TCGTTGATCCATCTCAAGGCCCAGTCGGCCTTTTGCTTGATTTGTGGAATTGTCTCAA 46151 Query 18390 TAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAG 18449 | ||||| |||||| || || || | || || | ||| ||||| || || | | Sbjct 46152 TGGCATTGAACAAAAACTCAGACTCCTTAGGGTCCTTGACATACGTGTCAATCAATAGCG 46211 Query 18450 AATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT 18509 | || |||| ||||| || | ||||| ||||| || | || || | | |||| Sbjct 46212 AGTATGTTTCCGAATGGATATTCTCCATCATGATCTGGAACCCGTAGAAAAACTTGGCCT 46271 Query 18510 CGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAG 18569 | || |||| ||| | |||| | || ||||| ||||| || || || ||||| | Sbjct 46272 CTGGGACCTGAACTTCGGCAGAAAAGTTCTCCACCAAGTTCTCGTTGACAATTCCGTCCG 46331 Query 18570 CAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GAT 18626 | || ||||| |||||||| ||||||| || || ||| | | | | Sbjct 46332 ACGCAGCAAAAAACGCCAAAACCCGAGAAATGAAAAACCGCTCGTTTTCCGTCAACCGGT 46391 Query 18627 TGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATT 18686 ||||||| || | | ||| || || | ||||| || || | |||||| || || | || Sbjct 46392 TGTTCCAGTCGTGCAAATCCTTGGACAAATCAATCTCCTCGGCTGTCCAGAACGACGCTT 46451 Query 18687 CGGCCTGTTTGTACAT 18702 |||||| |||||||| Sbjct 46452 CGGCCTTCTTGTACAT 46467 >seq6 Length=1504906 Score = 136 bits (150), Expect = 6e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 155836 TTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAA 155895 ||||||| |||||||| || |||||||| || ||||| ||| ||| || | ||| | Sbjct 99484 TTAAAACTTTGACTGGTAAGACTATTACCTTGGAAGTTGAATCTTCCGACACCATTGACA 99543 Query 155896 ACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTT 155955 | || ||| ||| || ||||| |||||||| || || || || |||||||||||||| | Sbjct 99544 ATGTCAAATCTAAGATTCAAGACAAAGAAGGTATCCCACCTGATCAACAAAGATTGATCT 99603 Query 155956 ATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAG 156014 ||| |||||||| | |||||| |||||| || || || || ||||| || ||| || Sbjct 99604 TTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGACTACAATAT-TCAAAAGGAA 99662 Query 156015 GCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | || | || || || || ||||| ||||| |||| Sbjct 99663 TCCACCTTGCACTTGGTTTTGAGATTGAGAGGTGGTG 99699 >seq1 Length=3127730 Score = 129 bits (142), Expect = 9e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || |||||||| || || || || || ||||| ||| || Sbjct 1884536 AATGCAAATCTTTGTTAAGACCTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCCTC 1884595 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | |||| ||||| || || || ||||| || ||||| || || ||||| || Sbjct 1884596 TGACACTATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCACCAGATCA 1884655 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||||||||| ||| ||||| || | |||||| ||||| || || || || || Sbjct 1884656 ACAAAGATTGATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACCTTGTCTGACTACAA 1884715 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| ||| | || | || || || | ||||| ||||| ||| Sbjct 1884716 CAT-TCAAAAGGAGTCCACTTTGCACTTGGTCCTTAGATTGAGAGGTGGT 1884764 Score = 122 bits (134), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || |||||||| || || || || || ||||| ||| ||| Sbjct 1884765 ATGCAAATCTTCGTTAAGACCTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCCTCT 1884824 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || || || ||||| || ||||| || || ||||| ||| Sbjct 1884825 GACACTATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAA 1884884 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| ||||| || | |||||| ||||| || || || || || Sbjct 1884885 CAAAGATTGATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACCTTGTCTGACTACAAC 1884944 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| ||| | || | || || || | ||||| ||||| ||| Sbjct 1884945 AT-TCAAAAGGAGTCCACTTTGCACTTGGTCCTTAGATTGAGAGGTGGT 1884992 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || |||||||| || || || || || ||||| ||| ||| Sbjct 1884993 ATGCAAATCTTCGTTAAGACCTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCCTCT 1885052 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || || || ||||| || ||||| || || ||||| ||| Sbjct 1885053 GACACTATTGACAACGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAA 1885112 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| ||||| || | |||||| ||||| || || || || || Sbjct 1885113 CAAAGATTGATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACCTTGTCTGACTACAAC 1885172 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| || | || | || || || | ||||| ||||| ||| Sbjct 1885173 AT-TCAAAAGGAATCCACTTTGCACTTGGTCCTTAGATTGAGAGGTGGT 1885220 >seq4 Length=1632271 Score = 111 bits (122), Expect = 2e-19 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | ||||| | || || ||||| ||||| || ||||| || Sbjct 76710 AAGATGCAAATTTTCGTCAAAACCCTTACCGGTAAAACCATTACCTTGGAAGTGGAGTCC 76651 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || ||| || || ||||| |||||||| || || ||||| Sbjct 76650 TCGGACACCATTGACAATGTCAAATCCAAGATTCAAGACAAAGAAGGTATTCCACCAGAC 76591 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| ||||||||| | ||||| |||||| || || || || Sbjct 76590 CAACAAAGATTGATCTTTGCTGGTAAGCAGTTGGAAGACGGCAGAACCTTGTCCGACTAC 76531 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || | || || || | ||||| ||||| |||| Sbjct 76530 A--ACATCCAAAAGGAATCCACTTTGCACTTGGTCCTCAGATTGAGAGGTGGTG 76479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871597470400