Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20malanga_20[genbank_20GCA_5F001599215.1_202016-03- 01] 44 sequences; 16,719,687 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq5 149 1e-30 seq1 136 7e-27 seq6 134 2e-26 seq4 125 1e-23 seq10 114 2e-20 >seq5 Length=1624186 Score = 149 bits (164), Expect = 1e-30 Identities = 369/555 (66%), Gaps = 9/555 (2%) Strand=Plus/Minus Query 38819 CATCACATTGTATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTC 38878 |||||| || ||||| || || |||||| |||| |||||||| || || |||||| | Sbjct 610709 CATCACCTTAACCTTTTGATAGTCTGAAACTCTTTTCTCGAAAAAATTCGTCTTTCCTGC 610650 Query 38879 TAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTAT 38938 || || || | ||| |||||||| ||||| || ||||| || ||| | || Sbjct 610649 CAAGGAGATGTTTTCCATGAAATCAAAAGGATTGTTCACGTTATA-TACTTTATTGTTAC 610591 Query 38939 CAATACATA-TAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAAT 38997 | | ||| ||| || | ||||| ||||| || |||||||| |||||| || Sbjct 610590 CTAAGGATACTAACAACCGGTCGGCAACAAACTCCACATATTGGTTCATTAAAGTGGCAT 610531 Query 38998 TCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacag 39057 |||| || || || | | | || ||||| | | ||| |||||||| | |||| Sbjct 610530 TCATTCCTAACAAGGATACAGAAAGAGCGTCATCGAAATATTTCTTTTCTATAGCAACAG 610471 Query 39058 cttgtttaattatcataattatattattttttgat--aatttatatttaatatgattcgc 39115 ||| | || || | || | || |||| || ||||| | || | |||| | Sbjct 610470 CTTCGGTGATGATTTT--TTCAACAATCTTTTTATCCAATTTGTTTTGCAAATGA---GA 610416 Query 39116 atataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACT 39175 || | || ||| |||||||| ||||| || ||||||||||| || || || ||| Sbjct 610415 GTACAATAGACACGCAAAATCAGTATGCAAGCCTTCGTCCCTGCTAATCAACTCGTTAGA 610356 Query 39176 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 39235 ||| || || |||||||| | ||||| ||||| | |||||| ||||| ||||| | Sbjct 610355 AAACGTCAAACCTGGCATGAGACCTCTTTTTTTCAACCAAAAGATTGAAGCAAACGATCC 610296 Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTT 39295 || || ||||| || || || ||||| || | | | | || |||||| || Sbjct 610295 TGAGAAAAATATTCCTTCTACGGCAGCAAAGGCAACAAGACGTTCTGCAAACAAAGCGTT 610236 Query 39296 ATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTC 39355 || || |||||| || ||||| || ||||| | |||||| |||||| |||| Sbjct 610235 GTCGTCGTTGATCCAACGTAAAGCCCAGTCAGCTTTCTCTTTGATGCTCGGTATAGTTTC 610176 Query 39356 TATAGCTTTAAATAA 39370 || || || || || Sbjct 610175 GATGGCATTGAACAA 610161 >seq1 Length=3127730 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | || || || ||||| | ||| || ||| || || || Sbjct 1884994 ATACCACCTCTCAATCTAAGGACCAAGTGCAAAGTGGACTCCTTTTGAATGTTGTAGTCA 1884935 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || |||||||||||||||||||| ||||| ||||| || ||| Sbjct 1884934 GACAAGGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGT 1884875 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || ||||| || || ||||| Sbjct 1884874 GGAATACCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATAGTGTCAGAGGATTCA 1884815 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| ||||| |||||||| || || |||| ||| || ||||| Sbjct 1884814 ACTTCCAAAGTGATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 1884765 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | || || || ||||| | ||| || ||| || || || Sbjct 1884766 ATACCACCTCTCAATCTAAGGACCAAGTGCAAAGTGGACTCCTTTTGAATGTTGTAGTCA 1884707 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || |||||||||||||||||||| ||||| ||||| || ||| Sbjct 1884706 GACAAGGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGT 1884647 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || ||||| || || ||||| Sbjct 1884646 GGAATACCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATAGTGTCAGAGGATTCA 1884587 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | ||| ||||| |||||||| || || |||| || || |||||| Sbjct 1884586 ACTTCCAAAGTGATGGTCTTACCAGTCAAGGTCTTAACAAAGATTTGCATT 1884536 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | || | || || || ||||| | || || ||| || || || || Sbjct 1885220 ACCACCTCTCAATCTAAGGACCAAGTGCAAAGTGGATTCCTTTTGAATGTTGTAGTCAGA 1885161 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || | || || |||||||||||||||||||| ||||| ||||| || ||||| Sbjct 1885160 CAAGGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGG 1885101 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| || || || || || ||||| || || ||||| || Sbjct 1885100 AATACCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATAGTGTCAGAGGATTCAAC 1885041 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| | ||| ||||| |||||||| || || |||| ||| || ||||| Sbjct 1885040 TTCCAAAGTGATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 1884993 >seq6 Length=1504906 Score = 134 bits (148), Expect = 2e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | || || || || || || || | || || |||||| || || || Sbjct 99698 ACCACCTCTCAATCTCAAAACCAAGTGCAAGGTGGATTCCTTTTGAATATTGTAGTCAGA 99639 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || | || || ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 99638 CAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGG 99579 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||| ||||| || ||| ||| ||||| || || || || ||||| || Sbjct 99578 GATACCTTCTTTGTCTTGAATCTTAGATTTGACATTGTCAATGGTGTCGGAAGATTCAAC 99519 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 ||| | ||||| || |||||||| || ||||||| ||| Sbjct 99518 TTCCAAGGTAATAGTCTTACCAGTCAAAGTTTTAACGAA 99480 >seq4 Length=1632271 Score = 125 bits (138), Expect = 1e-23 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || | || || || ||||| | || || || || Sbjct 76472 TTCTTACCACCACCTCTCAATCTGAGGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTG 76531 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || || | || |||| ||||| || ||||||||||| || ||||| |||||| Sbjct 76532 TAGTCGGACAAGGTTCTGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCTTTGTTGG 76591 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 || ||||| || |||||||| ||||| || || ||| ||||| || || || || Sbjct 76592 TCTGGTGGAATACCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCCGAG 76651 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || ||||| | |||||||||||||| || | ||||| | ||| || ||||| || Sbjct 76652 GACTCCACTTCCAAGGTAATGGTTTTACCGGTAAGGGTTTTGACGAAAATTTGCATCTT 76710 >seq10 Length=744508 Score = 114 bits (126), Expect = 2e-20 Identities = 307/463 (66%), Gaps = 15/463 (3%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| || ||||| ||| |||||||||||||||| |||||||| | || || || Sbjct 45629 TTTTGATAATCAGAGACTCTTTTTTCGAAAAAGTTGGTTTTTCCGGCCAAGGAAATGTTT 45688 Query 38892 TTCATAAAATCAAATGGATTTTTGGTA---TTATAATATTTTTCTCCTATC-AATACATA 38947 | |||||||||||||||||| |||| || ||| || | | || | || | Sbjct 45689 TCCATAAAATCAAATGGATT---GGTAACGTTGTAAACCTTGT-TGTTACCCAAGGCGAC 45744 Query 38948 TAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAA 39007 || ||||| ||||| ||||| || ||||| |||| |||| || ||||| ||||| Sbjct 45745 CAACAATCTGTCGGCGCAGAATTCCACGTATTGACACATCAATTTGCAGTTCATGCCCAA 45804 Query 39008 TAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaat 39067 || || ||| || || || || | |||||||| || | ||||||| | || Sbjct 45805 CAAGGAAACTGGCAAGGCGTCGGTAAAGTAGTCTTTTTCAATGTTGACAGCTTCGGTGAT 45864 Query 39068 tatcataattatattattttttgataa--tttatatttaatatgattcgcatataGTAAA 39125 || | | | |||| | | ||| | | | ||| | | | | || Sbjct 45865 GATTTTCTCGACA--ATTTCCGGGTCTGGTTTGTTCTGCAAGTGA---GAAAACAACAAG 45919 Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || ||||| || || || ||||||||||| || | || ||||| ||| ||| || || Sbjct 45920 CAAGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAGATCAATTCGTTAGAAAACGTCAAG 45979 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 39245 || ||||| || ||||| ||||| | ||| || || || |||||| | || ||||| Sbjct 45980 CCCGGCATCAAACCTCTTTTTTTCAACCAGAAAATAGAAGCAAAAGAGCCCGAGAAGAAA 46039 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACA 39288 || || || ||| ||||| || | | |||| | |||||| Sbjct 46040 ATGCCTTCAACAGCAGCAAAGGCAACCAATCTTTCAGCAAACA 46082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135502175200