Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20malanga_20[genbank_20GCA_5F001599215.1_202016-03- 01] 44 sequences; 16,719,687 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq10 111 2e-18 seq5 105 1e-16 >seq10 Length=744508 Score = 111 bits (122), Expect = 2e-18 Identities = 237/345 (69%), Gaps = 12/345 (3%) Strand=Plus/Minus Query 1455976 CCAGAGGC-ACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 |||||||| | |||| || ||||||||||||||| || || || ||||| || ||||| Sbjct 46275 CCAGAGGCCAAGTTT-TTCTACGGGTTCCAGATCATGATGGAGAATATCCATTCGGAAAC 46217 Query 1456035 CTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCG 1456094 |||||||| |||| ||||| || ||||||||||| ||| || | || Sbjct 46216 ATACTCGCTATTGATTGACACGTATGTCAAGGACCCTAAGGAGTCTGAGTTTTTGTTCAA 46157 Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 ||||| || || | || | | | |||||||||||||||| ||| |||||||| Sbjct 46156 TGCCATTGAGACAATTCCACAAATCAAGCAAAAGGCCGACTGGGCCTTGAGATGGATCAA 46097 Query 1456155 CAAGGA--GGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCA 1456211 | | || ||||| | ||||| || | | || | |||||| || || || |||| Sbjct 46096 CGACGACCAGGCCTTG----TTTGCTGAAAGATTGGTTGCCTTTGCTGCTGTTGAAGGCA 46041 Query 1456212 TCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCC 1456270 | || ||||||||| ||| ||| | || || ||| | || || | || | ||| || Sbjct 46040 TTTTCTTCTCGGGCTCTTT-TGCTTCTATTTTCTGGTTGAAAAAAAGAGGTTTGATG-CC 45983 Query 1456271 GGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAGTTTT 1456315 || ||| ||| |||||||| ||| | | ||||||| ||| Sbjct 45982 GGGCTTGACGTTTTCTAACGAATTGATCTGCAGAGACGAAGGTTT 45938 >seq5 Length=1624186 Score = 105 bits (116), Expect = 1e-16 Identities = 206/298 (69%), Gaps = 11/298 (4%) Strand=Plus/Plus Query 1601173 GAGCGAGTCCTCCTGGTTGTAGGGG---TCGCTCATGATGGCCACGCGCGCATTCTGGCC 1601229 || ||||||||||||||||||| | | || | ||||||||| ||||||||||| Sbjct 1197259 GACCGAGTCCTCCTGGTTGTAGCCGCTGTAGCAAAGAATGGCCACGATGGCATTCTGGCC 1197318 Query 1601230 CATCGGGAGGCGCGTGGCGCCGATGACGTCCTCCATGGCG---GTCTGCACCAGCGGCAC 1601286 ||| || | | || | ||| | |||||||| | ||| ||| |||| Sbjct 1197319 TGCCGGAAG-CTCTCGGAACT--TGAGATACTCCATGGAGCGCGTCGTGGCCAACGGCTT 1197375 Query 1601287 CTGCGGGTAGCACAGGGCGTGCGACACCGTGTCGATGGCATGGTCGGCGTTGA-GCGACA 1601345 |||||| ||| ||| | || | || ||||| ||| | || |||| | || | Sbjct 1197376 CTGCGGATAGTACAAGATGTTGGCCATGGTGTCCATGCGGACGCCGTAGTTGGTGAGAAA 1197435 Query 1601346 CGACGGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGT 1601405 | ||| || || |||||||||||| || | |||||| |||| ||||||| |||||||| Sbjct 1197436 C-ACGCCCATGGCCTGCTTGCCCATCGCGGACTGGTACGTGTTACGCGGCGACTGGTTGT 1197494 Query 1601406 GGTTGGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTC 1601463 ||| | |||||||||||||||||| |||| || || | |||||||| ||| Sbjct 1197495 GGTCCGGGAACGGGATGATGGACGCGGCCACGCCGAGAATCATTGACGGGTGGATCTC 1197552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177806956119128