Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20malanga_20[genbank_20GCA_5F001599215.1_202016-03- 01] 44 sequences; 16,719,687 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 140 8e-28 seq4 120 7e-22 >seq1 Length=3127730 Score = 140 bits (154), Expect = 8e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | ||| | ||||||||| ||||| ||||| || || | | ||| || || Sbjct 1884752 TCTAAGGACCAAGTGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTACC 1884693 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || || || | | |||||| || || |||| |||||||| Sbjct 1884692 ATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCCTT 1884633 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || |||||| || ||||| || || ||||||||| |||||| || | |||||| Sbjct 1884632 GTCTTGAATCTTTGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACTTCCAAAGTGAT 1884573 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || | ||||| ||||| | |||||| Sbjct 1884572 GGTCTTACCAGTCAAGGTCTTAACAAAGATTTGCATT 1884536 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | ||| | ||||||||| ||||| ||||| || || | | ||| || || Sbjct 1884980 TCTAAGGACCAAGTGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTACC 1884921 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || || || | | |||||| || || |||| |||||||| Sbjct 1884920 ATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCCTT 1884861 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || |||||| || ||||| || || ||||||||| |||||| || | |||||| Sbjct 1884860 GTCTTGAATCTTTGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACTTCCAAAGTGAT 1884801 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| || || | ||||| Sbjct 1884800 GGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 1884765 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | ||| | |||||| || ||||| ||||| || || | | ||| || || Sbjct 1885208 TCTAAGGACCAAGTGCAAAGTGGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTACC 1885149 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || || || | | |||||| || || |||| |||||||| Sbjct 1885148 ATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCCTT 1885089 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || |||||| || ||||| || || ||||||||| |||||| || | |||||| Sbjct 1885088 GTCTTGAATCTTTGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACTTCCAAAGTGAT 1885029 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| || || | ||||| Sbjct 1885028 GGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 1884993 >seq4 Length=1632271 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | ||| | |||||| || ||||||||||| || || | | ||| || || Sbjct 76492 TCTGAGGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCC 76551 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| |||||| || || ||||| | | ||||||||| || |||| ||||| || Sbjct 76552 GTCTTCCAACTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTT 76611 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || ||||| ||| || || || |||||||| ||| || || || | || || Sbjct 76612 GTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCCGAGGACTCCACTTCCAAGGTAAT 76671 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || || || || || | ||||| || Sbjct 76672 GGTTTTACCGGTAAGGGTTTTGACGAAAATTTGCATCTT 76710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151346528060