Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 172 6e-38 >seq3 Length=2118207 Score = 172 bits (190), Expect = 6e-38 Identities = 503/773 (65%), Gaps = 9/773 (1%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||| || || ||||| | ||||| || | |||| || | |||| |||||| Sbjct 1741414 GAGAACAAGCGTCGTTTCGTTCTCTTCCCAATCAAGTACCACGAAGTCTGGCAAATGTAC 1741355 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || |||||||| || || |||||||||| ||| || | ||| || ||||| || | Sbjct 1741354 AAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAAATTGACTTGAGTAAGGATACCACT 1741295 Query 116711 GACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 |||||| | | |||||| | ||||| | | ||||| | | |||| || Sbjct 1741294 GACTGGAACCAAAAGTTGAACAAGAACGAAAGATACTTCATTTCCCGTATCTTGGCTTTC 1741235 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 ||||| ||| ||||| || ||||||||||| |||||||| ||| || ||||| Sbjct 1741234 TTCGCTGCCTCTGACGGTATTGTCAACGAGAACTTGGTCGAGAACTTCTCTGCCGAGGTC 1741175 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 || | | || || ||| |||||||| || || || ||||| ||| | ||||| Sbjct 1741174 CAAATTCCAGAAGCCAAGTGTTTCTACGGTTTCCAAATTATGATGGAAAACATTCACTCC 1741115 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGT 116944 || | || || | || ||||| ||||| | | || ||| | | ||| Sbjct 1741114 GAGACCTACTCTTTGTTAATTGACACTTACGTTAAGGACCCTAAGGAAGCTGACTTCC-- 1741057 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 | || || || || || | || || ||| ||| | ||||||| || ||||| || | Sbjct 1741056 -TTTTCAATGCTATTGACAACATTCCATGCATCAGAAAGAAGGCTGACTGGGCCTTGAGA 1740998 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 |||||| | | | |||||| ||||| || | | || || || || ||||| ||| Sbjct 1740997 TGGATCTCTGACGACGAGGCCTTGTTCGGTGAAAGATTAGTTGCTTTTGCTGCCGTTGAG 1740938 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 || | ||||| || ||| || | || || ||| | ||||| | || | ||| Sbjct 1740937 GGTATTTTCTTCAGTGGTTCTTTTGCTTCTATCTTCTGGTTAAAGAAGAGAGGTTTGATG 1740878 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTT 117184 || || |||||||| ||| ||| | |||| ||| || || ||| | ||| ||||| Sbjct 1740877 CCAGGTTTGACTTTCTCCAATGAGTTGATCTGCAGAGATGAAGGTTTACATACTGACTTC 1740818 Query 117185 GCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATC 117244 ||||||||| | ||| || ||| | |||| | | | || | ||||| Sbjct 1740817 GCCTGTTTGTTATTCTCCCACTTGCAAAACAGACCAGACCCAGTTATTGTTGAGAAGATC 1740758 Query 117245 GTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTG 117304 |||| || || ||| |||||||| ||| ||||||| || |||| || || Sbjct 1740757 ATCACTGAGGCTGTCAAGATCGAGCAAGAATTCTTCACCGACGCTTTGCCAGTCTCCTTG 1740698 Query 117305 CTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAG 117357 |||| | || ||| ||||| |||||| |||| ||||| |||||||| Sbjct 1740697 TTGGGTATGAACGCTGAATTGATGTGCCAATACGTCGAATTCGTTGCCGACAG 1740645 Score = 109 bits (120), Expect = 6e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || | || || || ||||| ||| | || ||||| || Sbjct 53213 AAAATGCAAATTTTCGTCAAGACTTTAACAGGTAAGACCATTACCTTGGAAGTCGAGTCC 53272 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || || | ||||| || || || || | ||| Sbjct 53273 TCCGACACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGTATTCCACCTGAC 53332 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||| || | |||| ||| || || ||| |||| |||| | ||||| |||||| Sbjct 53333 CAACAAAGATTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACCCTTTCTGACTAC 53392 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 ||||||||||||||| |||| |||| | || || | ||||| || || || Sbjct 53393 AACATCCAGAAGGAGTCCACCTTGCACTTGGTCTTAAGATTGAGAGGTGGTGG 53445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219077635440