Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3 140 3e-28 >seq3 Length=2118207 Score = 140 bits (154), Expect = 3e-28 Identities = 475/731 (65%), Gaps = 12/731 (2%) Strand=Plus/Plus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||| || ||||| ||||| || || ||||||||||| ||||| ||| || || ||| Sbjct 1740522 TTTTGGTAGTCACTGACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCCAAGGAGATGTTT 1740581 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAAACACT-TTATCACAACCTAGTTCTAATAG 13699 ||||| || || ||||| || ||||| | | | || | ||| | | | | Sbjct 1740582 TCCATGAAGTCGAATGGGTTG-TTGACGTTGTAAATCTTCTTGTTACCCAAAGCAATCAA 1740640 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 |||||| || |||| || || | ||||| |||| || ||| |||||||| | | Sbjct 1740641 TAATCTGTCGGCAACGAATTCGACGTATTGGCACATCAATTCAGCGTTCATACCCAACAA 1740700 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 || || | | ||| || ||||||| || || |||||||| | || || Sbjct 1740701 GGAGACTGGCAAAGCGTCGGTGAAGAATTCTTGCTCGATCTTGACAGCCTCAGTGATGAT 1740760 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA--AACACGCA 13877 | || ||| | | | | | |||| | || | ||| | |||| || Sbjct 1740761 CTTCTCAACAATAAC--TGGGTCTGGTCTGTTTTGCAAGTGGGAGAATAACAAACAGGCG 1740818 Query 13878 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13937 || ||| ||| | || |||||||| | || | || || || || || || |||||| Sbjct 1740819 AAGTCAGTATGTAAACCTTCATCTCTGCAGATCAACTCATTGGAGAAAGTCAAACCTGGC 1740878 Query 13938 ATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCC 13997 ||||| |||| || |||||||| || || | |||||| || || ||||| || ||| Sbjct 1740879 ATCAAACCTCTCTTCTTTAACCAGAAGATAGAAGCAAAAGAACCACTGAAGAAAATACCC 1740938 Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14057 ||||| |||||||| || | ||||| ||| || ||| | || | | || || |||||| Sbjct 1740939 TCAACGGCAGCAAAAGCAACTAATCTTTCACCGAACAAGGCCTCGTCGTCAGAGATCCAT 1740998 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT-TCAATAGCATTAAATAA 14116 | ||||| |||| || ||| | || || | |||| ||||||||||| || | Sbjct 1740999 CTCAAGGCCCAGTCAGCCTTCTTTCTGAT-GCATGGAATGTTGTCAATAGCATTGAAAAG 1741057 Query 14117 ATATTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14174 | || |||| | || ||| || ||| || ||||| | || || | || Sbjct 1741058 GAAGTCAGCTTCCTTAGGGTCCTT--AACGTAAGTGTCAATTAACAAAGAGTAGGTCTCG 1741115 Query 14175 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT 14234 ||||| ||||||||||| || || ||||| || || || | ||||| | ||| Sbjct 1741116 GAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTGGCTTCTGGAATTTGG 1741175 Query 14235 ACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 || || | | || | ||| |||| || || || || ||||| ||| || || || Sbjct 1741176 ACCTCGGCAGAGAAGTTCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCAGCGAAG 1741235 Query 14295 AATGCCAATAT 14305 || ||||| || Sbjct 1741236 AAAGCCAAGAT 1741246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727886064600