Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 197 3e-45 seq9 140 7e-28 >seq3 Length=2118207 Score = 197 bits (218), Expect = 3e-45 Identities = 388/564 (69%), Gaps = 20/564 (4%) Strand=Plus/Minus Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801 |||||||| |||||| || || || ||||| | |||||| | || || | | || Sbjct 1741360 ATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAAATTGACTTGAGTAAGGAT 1741301 Query 268802 TTAATAGATTGGAA--AAATTTAAAACCAGAA-GAAAGAAGATTTATATCTTATATTCTT 268858 | || ||||| ||| | ||| |||| |||||| || || || ||| | Sbjct 1741300 ACCACTGACTGGAACCAAAAGTTGAACAAGAACGAAAGATACTTCATTTCCCGTATCTTG 1741241 Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA 268918 || || || || | ||| ||||| || ||||| || | || ||||| |||| | Sbjct 1741240 GCTTTCTTCGCTGCCTCTGACGGTATTGTCAACGAGAACTTGGTCGAGAACTTCTCTGCC 1741181 Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATT 268978 ||||| || ||||| ||||||| ||||| ||||| ||||| || || ||||| ||| Sbjct 1741180 GAGGTCCAAATTCCAGAAGCCAAGTGTTTCTACGGTTTCCAAATTATGATGGAAAACATT 1741121 Query 268979 CATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAA 269038 || || |||| ||| | | ||||| || ||||| | ||| || ||| || Sbjct 1741120 CACTCCGAGACCTACTCTTTGTTAATTGACACTTACGT------TAAGGACCCTAAGGAA 1741067 Query 269039 A--GACTA--TTTTC--TTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATG 269091 |||| ||||| | |||| || ||| | | || | ||||| || |||| || Sbjct 1741066 GCTGACTTCCTTTTCAATGCTATTGACAACATTCCA-TGCATCAGAAAGAAGGCTGACTG 1741008 Query 269092 GGCTCTGAAATGGATAAACGATAGCGCG-CCTTA--CGGAGAAAGGTTAGTTGCTTTTGC 269148 ||| ||| |||||| || || | |||| ||| ||||| |||||||||||||| Sbjct 1741007 GGCCTTGAGATGGATCTCTGACGACGAGGCCTTGTTCGGTGAAAGATTAGTTGCTTTTGC 1740948 Query 269149 CGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAG 269208 || || || ||||| ||||| || |||||||| ||||||| ||||| ||||| || Sbjct 1740947 TGCCGTTGAGGGTATTTTCTTCAGTGGTTCTTTTGCTTCTATCTTCTGGTTAAAGAAGAG 1740888 Query 269209 AGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 ||| | |||||||| || |||||||| || || ||||| |||| || ||||||||||| Sbjct 1740887 AGGTTTGATGCCAGGTTTGACTTTCTCCAATGAGTTGATCTGCAGAGATGAAGGTTTACA 1740828 Query 269269 CTGCGACTTCGCTTGTTTATTATT 269292 |||||||| ||||| ||||| Sbjct 1740827 TACTGACTTCGCCTGTTTGTTATT 1740804 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || ||||| || || |||||||| || |||||||||||||| | || Sbjct 53418 TGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTACCGTCTTCCAACTGC 53359 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || | || ||||| ||||| || || ||||| || ||||| ||||| Sbjct 53358 TTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGGATCTTG 53299 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | ||| ||| | || || || | ||||| |||||||| || Sbjct 53298 GACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTACCTGTT 53239 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || ||||||||| Sbjct 53238 AAAGTCTTGACGAAAATTTGCATTTTG 53212 >seq9 Length=507287 Score = 140 bits (154), Expect = 7e-28 Identities = 173/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 104326 ATTTATT--CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 ||||||| || ||||| | || | |||| || | || ||||| || || || || Sbjct 281885 ATTTATTGACCACCTCTCAATCTTAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTG 281944 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 |||||||| ||||||||||||||||||| ||| || || || ||||| | || ||||| Sbjct 281945 TAGTCAGAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGG 282004 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || ||||| || ||||| || || || ||||| | || || || || | ||| || | Sbjct 282005 TCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATGGTGTCAGAA 282064 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||| ||||| || ||||| ||||||||||| | || || || || || ||||| Sbjct 282065 GATTCAACCTCAAGAGTAATGGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 282120 Score = 132 bits (146), Expect = 1e-25 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| || | || ||||| || || || || |||||| Sbjct 282119 ATACCACCTCTCAATCTYAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 282178 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||||||||||| ||| || || || ||||| | || ||||| || ||| Sbjct 282179 GAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGRTCTGGA 282238 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| | || || || || | || || || ||| Sbjct 282239 GGAATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATRGTGTCAGAAGATTCA 282298 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| ||||||||||| | || || || || || ||||| Sbjct 282299 ACYTCAAGAGTAATGGTCTTACCAGTCAAAGTCTTRACGAAGATTTGCAT 282348 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || |||||||| ||||||||||||||||| | ||| || ||| Sbjct 282836 GTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTGCTTACCA 282895 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || |||| | |||||| || ||||| || ||||| || || || ||||| | || Sbjct 282896 GCGAAGATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTTG 282955 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||||| || || || || | ||||| |||||||| || | ||| Sbjct 282956 ACGTTGTCAATGGTATCGGAAGACTCAACTTCCAAGGTAATGGTCTTACCGGTTAATGTC 283015 Query 104543 TTTACAAATATCTGCATT 104560 || || || || |||||| Sbjct 283016 TTAACGAAGATTTGCATT 283033 Score = 127 bits (140), Expect = 5e-24 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| || | || ||||| || || || || |||||| Sbjct 282347 ATACCACCTCTCAATCTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 282406 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||||||||| | ||| || || || || || | | ||||| || ||| Sbjct 282407 GAAAGAGTTCTACCGTCTTCYAATTGCTTACCRGCGAARATYAAWCKYTGTTGRTCTGGA 282466 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| | || || || || | || || || || Sbjct 282467 GGAATACCTTCCTTGTCTTGGATCTTGGACTTRACGTTGTCAATRGTRTCRGAAGAYTCA 282526 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| |||||||| || | || || || || || ||||| Sbjct 282527 ACYTCMARRGTAATGGTCTTACCRGTYAAWGTCTTRACGAAGATTTGCAT 282576 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| || | || ||||| || || || || |||||| Sbjct 282575 ATACCACCTCTCAATCTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 282634 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||||||||||| ||| || || || ||||| | || ||||| || ||| Sbjct 282635 GAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGA 282694 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| | || || || || | ||| || | || Sbjct 282695 GGAATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATGGTGTCAGACGACTCG 282754 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || |||||||||||||| | || || || || || ||||| Sbjct 282755 ACTTCAAGAGTGATAGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 282804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398119706452