Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 seq9 113 4e-20 >seq3 Length=2118207 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 |||||||||| | || || || || ||||| || || | |||||| | ||||||||| | Sbjct 53212 CAAAATGCAAATTTTCGTCAAGACTTTAACAGGTAAGACCATTACCTTGGAAGTCGAGTC 53271 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||||||| || | ||||| ||||| ||||| ||||| || || || || Sbjct 53272 CTCCGACACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGTATTCCACCTGA 53331 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||||| ||| |||| | || || ||||| | ||||| | |||| | | || || Sbjct 53332 CCAACAAAGATTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACCCTTTCTGACTA 53391 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || || | || || || |||||||||||||| || Sbjct 53392 CAACATCCAGAAGGAGTCCACCTTGCACTTGGTCTTAAGATTGAGAGGTGG 53442 >seq9 Length=507287 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || ||||| || | || || | ||||||||| | Sbjct 282804 ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACTATCACTCTTGAAGTCGAGTCGTCT 282745 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||| ||||| ||||| || ||||| || ||| Sbjct 282744 GACACCATTGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 282685 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||||| || ||| |||||| | ||||| | |||| | || || ||| Sbjct 282684 CAAAGATTGATTTTCGCCGGTAAGCAATTAGAAGACGGTAGAACTCTTTCTGACTACAAC 282625 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| ||||| || |||| ||||| || ||||||||||| || Sbjct 282624 ATCCAAAAGGAATCCACTCTTCACTTAGTTTTGAGATTGAGAGGTGG 282578 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || ||||| || | ||||| | || || || | Sbjct 282120 ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACCATTACTCTTGAGGTTGAATCTTCT 282061 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||| ||||| ||||| || ||||| || ||| Sbjct 282060 GACACCATTGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 282001 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||||| || ||| |||||| | ||||| | |||| | || || ||| Sbjct 282000 CAAAGATTGATTTTCGCCGGTAAGCAATTAGAAGACGGTAGAACTCTTTCTGACTACAAC 281941 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAA 24224 || ||||| ||||| || |||| ||||| |||||||||||||| || | |||| Sbjct 281940 ATCCAAAAGGAATCCACTCTTCACTTAGTTTTAAGATTGAGAGGTGGTCAATAA 281887 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || |||||||| || || | |||||| | ||||| ||| | Sbjct 283033 AATGCAAATCTTCGTTAAGACATTAACCGGTAAGACCATTACCTTGGAAGTTGAGTCTTC 282974 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| ||||| || | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 282973 CGATACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCA 282914 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | | || | || || |||||| | ||||| | |||| | || || || Sbjct 282913 ACAGCGTTTAATCTTCGCTGGTAAGCAATTGGAAGACGGTAGAACTCTTTCTGACTACAA 282854 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||| ||||| || |||| || || |||||||||||||| || Sbjct 282853 CATCCAAAAGGAATCCACTCTTCACTTGGTTTTAAGATTGAGAGGTGG 282806 Score = 105 bits (116), Expect = 6e-18 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || ||||| || | ||||| | || || || | Sbjct 282348 ATGCAAATCTTCGTYAAGACTTTGACTGGTAAGACCATTACTCTTGARGTTGAATCTTCT 282289 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || ||||| ||||| ||||| || ||||| || ||| Sbjct 282288 GACACYATTGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGAYCAA 282229 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||||| || ||| |||||| | ||||| | |||| | || || ||| Sbjct 282228 CAAAGATTGATTTTCGCCGGTAAGCAATTAGAAGACGGTAGAACTCTTTCTGACTACAAC 282169 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| ||||| || |||| ||||| || ||||||||||| || Sbjct 282168 ATCCAAAAGGAATCCACTCTTCACTTAGTTTTRAGATTGAGAGGTGG 282122 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || || || | ||||| | || || || | Sbjct 282576 ATGCAAATCTTCGTYAAGACWTTRACYGGTAAGACCATTACYYTKGARGTTGARTCTTCY 282517 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || ||||| ||||| ||||| || ||||| || ||| Sbjct 282516 GAYACYATTGACAACGTYAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGAYCAA 282457 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | | || | || || |||||| | ||||| | |||| | || || ||| Sbjct 282456 CARMGWTTRATYTTCGCYGGTAAGCAATTRGAAGACGGTAGAACTCTTTCTGACTACAAC 282397 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| ||||| || |||| ||||| || ||||||||||| || Sbjct 282396 ATCCAAAAGGAATCCACTCTTCACTTAGTTTTGAGATTGAGAGGTGG 282350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935900442945