Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9 107 5e-18 seq3 95.1 3e-14 >seq9 Length=507287 Score = 107 bits (118), Expect = 5e-18 Identities = 148/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| |||||||| || ||||| | || || | |||||||||||||| Sbjct 282602 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGC 282661 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATT 288387 || || ||||| |||| | ||||| ||| || || ||||| || || ||||| Sbjct 282662 TTACCGGCGAAAATCAATCTTTGTTG---GTCTGGAGGAATACCTTCCTTGTCTTGGATC 282718 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || | || ||||| || || | || ||| || ||||| || ||||| ||||| || Sbjct 282719 TTGGACTTAACGTTGTCAATGGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTACCA 282778 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 |||| |||||| ||||| || ||||| Sbjct 282779 GTCAAAGTCTTAACGAAGATTTGCAT 282804 Score = 105 bits (116), Expect = 2e-17 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| |||||||| || ||||| | || || | |||||||||||||| Sbjct 282146 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGC 282205 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATT 288387 || || ||||| |||| | ||||| ||| || || ||||| || || ||||| Sbjct 282206 TTACCGGCGAAAATCAATCTTTGTTG---RTCTGGAGGAATACCTTCCTTGTCTTGGATC 282262 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || | || ||||| || || | || ||||| || || || || || ||||| || Sbjct 282263 TTGGACTTAACGTTGTCAATRGTGTCAGAAGATTCAACYTCAAGAGTAATGGTCTTACCA 282322 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 |||| |||||| ||||| || ||||| Sbjct 282323 GTCAAAGTCTTRACGAAGATTTGCAT 282348 Score = 102 bits (112), Expect = 2e-16 Identities = 140/206 (68%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| |||||||| || ||||| | || || | |||||||| ||||| Sbjct 282374 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCYAATTGC 282433 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATT 288387 || || ||||| || | | ||||| ||| || || ||||| || || ||||| Sbjct 282434 TTACCRGCGAARATYAAWCKYTGTTG---RTCTGGAGGAATACCTTCCTTGTCTTGGATC 282490 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || | || ||||| || || | || || || || || | || || ||||| || Sbjct 282491 TTGGACTTRACGTTGTCAATRGTRTCRGAAGAYTCAACYTCMARRGTAATGGTCTTACCR 282550 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || ||||| Sbjct 282551 GTYAAWGTCTTRACGAAGATTTGCAT 282576 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| |||||||| || ||||| | || || | |||||||||||||| Sbjct 281918 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGC 281977 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATT 288387 || || ||||| |||| | ||||| ||| || || ||||| || || ||||| Sbjct 281978 TTACCGGCGAAAATCAATCTTTGTTG---GTCTGGAGGAATACCTTCCTTGTCTTGGATC 282034 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || | || ||||| || || | || ||||| || || || || || ||||| || Sbjct 282035 TTGGACTTAACGTTGTCAATGGTGTCAGAAGATTCAACCTCAAGAGTAATGGTCTTACCA 282094 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 |||| |||||| ||||| || ||||| Sbjct 282095 GTCAAAGTCTTAACGAAGATTTGCAT 282120 >seq3 Length=2118207 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || | |||||||| || || || || |||||| Sbjct 53406 TCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTACCGTCTTCCAACTGCTTACCAGCGAAG 53347 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||||| | ||| || ||||| || |||||||| || | || || || Sbjct 53346 ATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGGATCTTGGACTTGACATTG 53287 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || ||||| | || || ||||| || || | |||||||||| Sbjct 53286 TCAATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTACCTGTTAAAGTCTTGACG 53227 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 53226 AAAATTTGCATTTTG 53212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654112827882