Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3 102 9e-17 seq9 87.8 2e-12 >seq3 Length=2118207 Score = 102 bits (112), Expect = 9e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | || ||||| ||||| ||| |||||| || || ||||| |||| Sbjct 53443 ACCACCTCTCAATCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGA 53384 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || | ||||||||||||||| || | || || ||||| | ||| Sbjct 53383 AAGGGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGG 53324 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||||| ||| || |||| | | | |||||| || || || Sbjct 53323 AATACCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGAC 53264 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | || ||||| || || |||| ||||| || || ||||||||||| Sbjct 53263 TTCCAAGGTAATGGTCTTACCTGTTAAAGTCTTGACGAAAATTTGCATTTT 53213 >seq9 Length=507287 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | || ||||| || | ||| |||||||| || ||||| |||| Sbjct 282805 ACCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGA 282864 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | |||| || | |||||||||||||| || | ||||| ||||| | || Sbjct 282865 AAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAGATTAAACGCTGTTGGTCTGGAGG 282924 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | |||||||| ||| || |||| ||| | | | || ||| || || | Sbjct 282925 AATACCTTCCTTGTCTTGGATCTTGGACTTGA-CGTTGTCAATGGTATCGGAAGACTCAA 282983 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || | || ||||| || || |||| ||||| || |||||||||||| Sbjct 282984 CTTCCAAGGTAATGGTCTTACCGGTTAATGTCTTAACGAAGATTTGCATT 283033 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 ||||||| |||| ||||| || | || || || || | ||| |||||||| || || Sbjct 281884 AATTTATTGACCACCTCTCAATCTTAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTT 281943 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 ||| |||| ||||| | |||| |||| |||||||| ||||| || | || || || Sbjct 281944 GTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTG 282003 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGC 42150 ||| | || | | |||||||| ||| || || | ||| | || | |||| Sbjct 282004 GTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTTAA-CGTTGTCAATGGTGTCAG 282062 Query 42151 TCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || | || ||||| || || || | ||||| || ||||||||||| Sbjct 282063 AAGATTCAACCTCAAGAGTAATGGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 282120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212670986960