Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq9 149 4e-31 seq3 131 1e-25 >seq9 Length=507287 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||||||||| || ||||| || || || ||||| |||||||| || Sbjct 282806 CCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAA 282865 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| ||||||| ||||| || |||||| | || |||||||||||||| ||| Sbjct 282866 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAGATTAAACGCTGTTGGTCTGGAGGA 282925 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || || | || || |||||| | || || Sbjct 282926 ATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCAACT 282985 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||| ||||| || | || || || || |||||||| Sbjct 282986 TCCAAGGTAATGGTCTTACCGGTTAATGTCTTAACGAAGATTTGCAT 283032 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||||||||||||| ||||| || || || ||||| |||||||| || Sbjct 281894 CCACCTCTCAATCTTAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAA 281953 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| ||||||||||||| || || ||| | ||||| | |||||||| ||| Sbjct 281954 AGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGA 282013 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || || | || || || || | ||| || Sbjct 282014 ATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATGGTGTCAGAAGATTCAACC 282073 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | |||||||| ||||| |||| ||| || || || ||||||||| Sbjct 282074 TCAAGAGTAATGGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCATA 282121 Score = 138 bits (152), Expect = 8e-28 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| |||||||| ||||| || || || ||||| |||||||| || Sbjct 282122 CCACCTCTCAATCTYAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAA 282181 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| ||||||||||||| || || ||| | ||||| | ||||| || ||| Sbjct 282182 AGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGRTCTGGAGGA 282241 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || || | || || || || | ||| || Sbjct 282242 ATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATRGTGTCAGAAGATTCAACY 282301 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | |||||||| ||||| |||| ||| || || || ||||||||| Sbjct 282302 TCAAGAGTAATGGTCTTACCAGTCAAAGTCTTRACGAAGATTTGCATA 282349 Score = 136 bits (150), Expect = 3e-27 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| |||||||| ||||| || || || ||||| |||||||| || Sbjct 282350 CCACCTCTCAATCTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAA 282409 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| ||||||| ||||| || || ||| | || || | ||||| || ||| Sbjct 282410 AGAGTTCTACCGTCTTCYAATTGCTTACCRGCGAARATYAAWCKYTGTTGRTCTGGAGGA 282469 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || || | || || || || | || || Sbjct 282470 ATACCTTCCTTGTCTTGGATCTTGGACTTRACGTTGTCAATRGTRTCRGAAGAYTCAACY 282529 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | |||||||| ||||| || | || || || || ||||||||| Sbjct 282530 TCMARRGTAATGGTCTTACCRGTYAAWGTCTTRACGAAGATTTGCATA 282577 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| |||||||| ||||| || || || ||||| |||||||| || Sbjct 282578 CCACCTCTCAATCTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAA 282637 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| ||||||||||||| || || ||| | ||||| | |||||||| ||| Sbjct 282638 AGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGA 282697 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || || | || || || || || || Sbjct 282698 ATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATGGTGTCAGACGACTCGACT 282757 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || || || ||||| |||| ||| || || || ||||||||| Sbjct 282758 TCAAGAGTGATAGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCATA 282805 >seq3 Length=2118207 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||||||| || || || | ||| || || || || |||||||| || Sbjct 53442 CCACCTCTCAATCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 53383 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| || || || |||||| | ||||| | |||||||| |||| Sbjct 53382 AGGGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGA 53323 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| | || || || ||| || || Sbjct 53322 ATACCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACT 53263 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || ||||||||||| |||||||| | ||| || || ||||||||||| || Sbjct 53262 TCCAAGGTAATGGTCTTACCTGTTAAAGTCTTGACGAAAATTTGCATTTT 53213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391917241415