Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq9 113 4e-20 seq3 105 6e-18 >seq9 Length=507287 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || || |||||||||||||| || || || | ||| || Sbjct 282590 CTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCG 282649 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| || || ||| | ||||||| ||| ||||| || ||||| ||||| || Sbjct 282650 TCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTG 282709 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| | | || | | | || | || | |||||| || ||||||||||| ||||| | Sbjct 282710 TCTTGGA-TCTTGGACTTAACGTTGTCAATGGTGTCAGACGACTCGACTTCAAGAGTGAT 282768 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| || || || |||||||| Sbjct 282769 AGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 282804 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| || || || |||||||||||||| || || || | ||| || Sbjct 281906 CTTAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCG 281965 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| || || ||| | ||||||| ||| ||||| || ||||| ||||| || Sbjct 281966 TCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTG 282025 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| | | || | | | || | || | |||||| ||||| || || || ||||||| Sbjct 282026 TCTTGGA-TCTTGGACTTAACGTTGTCAATGGTGTCAGAAGATTCAACCTCAAGAGTAAT 282084 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| || || || |||||||| Sbjct 282085 GGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 282120 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || || | ||| || || |||||||| Sbjct 282830 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTGC 282889 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || || || || ||||| || ||||| ||||| || ||||| || || Sbjct 282890 TTACCAGCGAAGATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTG 282949 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | ||| ||||||||||| ||||| | |||| || || ||||| Sbjct 282950 GACTTGA-CGTTGTCAATGGTATCGGAAGACTCAACTTCCAAGGTAATGGTCTTACCGGT 283008 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 283009 TAATGTCTTAACGAAGATTTGCAT 283032 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| || || || |||||||||||||| || || || | ||| || Sbjct 282134 CTYAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCG 282193 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| || || ||| | ||||||| ||| || || || ||||| ||||| || Sbjct 282194 TCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGRTCTGGAGGAATACCTTCCTTG 282253 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| | | || | | | || | || | ||||| ||||| || || || ||||||| Sbjct 282254 TCTTGGA-TCTTGGACTTAACGTTGTCAATRGTGTCAGAAGATTCAACYTCAAGAGTAAT 282312 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| || || || |||||||| Sbjct 282313 GGTCTTACCAGTCAAAGTCTTRACGAAGATTTGCAT 282348 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/216 (68%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || || |||||||||||||| || || || | ||| || Sbjct 282362 CTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCG 282421 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| || || ||| | || || | || || || || ||||| ||||| || Sbjct 282422 TCTTCYAATTGCTTACCRGCGAARATYAAWCKYTGTTGRTCTGGAGGAATACCTTCCTTG 282481 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || || | || | || | || || ||||| || || || | |||| Sbjct 282482 TCTTGGATCTTGGACTTRA-CGTTGTCAATRGTRTCRGAAGAYTCAACYTCMARRGTAAT 282540 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || || || |||||||| Sbjct 282541 GGTCTTACCRGTYAAWGTCTTRACGAAGATTTGCAT 282576 >seq3 Length=2118207 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || || ||||| ||||| || || || | |||| || || ||||| || Sbjct 53418 TGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTACCGTCTTCCAACTGC 53359 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||||| ||| ||||| || ||||| ||||| || || || || || Sbjct 53358 TTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGGATCTTG 53299 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||||||||| ||||||||||| | |||| || || || ||| Sbjct 53298 GACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTACCTGTT 53239 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || ||||||||||| Sbjct 53238 AAAGTCTTGACGAAAATTTGCAT 53216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003092649240