Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq9 114 3e-20 seq3 107 5e-18 >seq9 Length=507287 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| || |||||||||| ||||||||||| | ||| || || ||||||| || Sbjct 282829 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTG 282888 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || |||||||| | |||||| ||||| ||| ||| ||||| || || ||||| Sbjct 282889 CTTACCAGCGAAGATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTT 282948 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| || | ||| || | | || || ||||| || || |||||||| || Sbjct 282949 GGACTTGACGTTGTCAATGGTATCGGAAGACTCAACTTCCAAGGTAATGGTCTTACCGGT 283008 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | || || || || ||||| Sbjct 283009 TAATGTCTTAACGAAGATTTG 283029 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||| ||||| || |||||||||| ||||||||||| | ||| || || Sbjct 282589 TCTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACC 282648 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| | ||||| |||||||| || | | || ||||| ||| ||| ||||| Sbjct 282649 GTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTT 282708 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| ||| || | |||||| | | || || || | ||||| Sbjct 282709 GTCTTGGATCTTGGACTTAACGTTGTCAATGGTGTCAGACGACTCGACTTCAAGAGTGAT 282768 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || | ||| || || || ||||| Sbjct 282769 AGTCTTACCAGTCAAAGTCTTAACGAAGATTTG 282801 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| || |||||||||| ||||||||||| | ||| || || ||||| | || Sbjct 281917 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTG 281976 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| |||||||| || | | || ||||| ||| ||| ||||| || || ||||| Sbjct 281977 CTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTT 282036 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| || | |||||| | | ||| || || | || || |||||||| || Sbjct 282037 GGACTTAACGTTGTCAATGGTGTCAGAAGATTCAACCTCAAGAGTAATGGTCTTACCAGT 282096 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | ||| || || || ||||| Sbjct 282097 CAAAGTCTTAACGAAGATTTG 282117 Score = 102 bits (112), Expect = 2e-16 Identities = 145/213 (68%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||| ||||| || |||||||||| ||||||||||| | ||| || || Sbjct 282361 TCTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACC 282420 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| | ||||| || ||||| || | | || || || ||| ||| ||||| Sbjct 282421 GTCTTCYAATTGCTTACCRGCGAARATYAAWCKYTGTTGRTCTGGAGGAATACCTTCCTT 282480 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| ||| || | || || | | || || || | || || Sbjct 282481 GTCTTGGATCTTGGACTTRACGTTGTCAATRGTRTCRGAAGAYTCAACYTCMARRGTAAT 282540 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || | || || || || ||||| Sbjct 282541 GGTCTTACCRGTYAAWGTCTTRACGAAGATTTG 282573 Score = 96.9 bits (106), Expect = 8e-15 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| | || | ||| ||||| || |||||||||| ||||||||||| | ||| || || Sbjct 282133 TCTYAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACC 282192 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| | ||||| |||||||| || | | || || || ||| ||| ||||| Sbjct 282193 GTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGRTCTGGAGGAATACCTTCCTT 282252 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| ||| || | ||||| | | ||| || || | || || Sbjct 282253 GTCTTGGATCTTGGACTTAACGTTGTCAATRGTGTCAGAAGATTCAACYTCAAGAGTAAT 282312 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || | ||| || || || ||||| Sbjct 282313 GGTCTTACCAGTCAAAGTCTTRACGAAGATTTG 282345 >seq3 Length=2118207 Score = 107 bits (118), Expect = 5e-18 Identities = 159/225 (71%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| | ||| | ||| | || |||||||| |||| ||||||||||| | || || || Sbjct 53431 TCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTACC 53372 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||| |||||| || |||||||| | | || ||||| || ||| ||||| Sbjct 53371 GTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 53312 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| ||||| ||| || || | |||||| | | || || ||||| || || Sbjct 53311 GTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 53252 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638 |||||||| || | ||| || || |||||||| |||||| || Sbjct 53251 GGTCTTACCTGTTAAAGTCTTGACGAAAATTTG---CATTTTGGC 53210 Score = 105 bits (116), Expect = 2e-17 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 167767 GGCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTG 167826 ||| |||||||| | ||||| || |||| || | |||||| |||| ||| || Sbjct 1784930 GGCATCCTTGTACAACATGAAAGGAGTACCGGTTTCAGTCTGAGCCTCCAAGATGGCGTA 1784989 Query 167827 CCAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATA 167886 ||| | | ||| || || ||||| |||| ||||||||||| | ||||| | || || Sbjct 1784990 CCACAACTTTTGAGCCTTGACGGTGCTTCTACCTCTTCCTTCTCTCTCGTAACGTTCGTA 1785049 Query 167887 GAGGTCTTCGAAATCCTTCCCGTAAATTTC-GTCAAGACCGGGAGCTTCCTTCGGACAAA 167945 | |||||||| || | ||||||| ||| | |||| || |||||||| || ||| | | Sbjct 1785050 TAACTCTTCGAATTCGTCACCGTAAACTTCTGGCAAG-CCTGGAGCTTCGTTTGGAGAGA 1785108 Query 167946 AGAGACTCCAATTTCCA-TCGGTCTCGACCCTCTTCATGAA 167985 | ||| |||| | ||| || || || || ||||||||||| Sbjct 1785109 AAAGAGTCCATTCACCATTCTGT-TCCACTCTCTTCATGAA 1785148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921313006273