Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 4e-15 seq9 93.3 5e-14 >seq3 Length=2118207 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| || | || |||| ||||| || |||||| ||||| |||||||| || Sbjct 53442 CCACCTCTCAATCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 53383 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | |||| || | |||||| || ||||| ||||| | || ||||| | || Sbjct 53382 AGGGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGA 53323 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||||| | | | |||||| || || || Sbjct 53322 ATACCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACT 53263 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| || ||||| || || || | || || || || |||||||||||| Sbjct 53262 TCCAAGGTAATGGTCTTACCTGTTAAAGTCTTGACGAAAATTTGCATTTTG 53212 >seq9 Length=507287 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || ||||| | |||| || | ||||| || ||||| Sbjct 282842 TCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAG 282901 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || || ||||| ||||| | || | | |||||||| |||||| ||||| ||| Sbjct 282902 ATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTTGA-CGTT 282960 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| || || || |||| || ||||| || || || | || ||||| Sbjct 282961 GTCAATGGTATCGGAAGACTCAACTTCCAAGGTAATGGTCTTACCGGTTAATGTCTTAAC 283020 Query 46582 AAAGATTTGCATT 46594 |||||||||||| Sbjct 283021 GAAGATTTGCATT 283033 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || ||||| | |||| || | ||||| |||||||| Sbjct 281930 TCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAA 281989 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | || ||||| | || | | |||||||| |||||| ||| | ||| Sbjct 281990 ATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTT-AACGTT 282048 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| ||||| || || | || ||||| || || |||| || ||||| Sbjct 282049 GTCAATGGTGTCAGAAGATTCAACCTCAAGAGTAATGGTCTTACCAGTCAAAGTCTTAAC 282108 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 282109 GAAGATTTGCAT 282120 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || ||||| | |||| || | ||||| |||||||| Sbjct 282614 TCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAA 282673 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | || ||||| | || | | |||||||| |||||| ||| | ||| Sbjct 282674 ATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTT-AACGTT 282732 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| ||| || || || | ||||| || || || |||| || ||||| Sbjct 282733 GTCAATGGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTACCAGTCAAAGTCTTAAC 282792 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 282793 GAAGATTTGCAT 282804 Score = 86.0 bits (94), Expect = 7e-12 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || ||||| | |||| || | ||||| |||||||| Sbjct 282158 TCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAA 282217 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | || || || | || | | |||||||| |||||| ||| | ||| Sbjct 282218 ATCAATCTTTGTTGRTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTT-AACGTT 282276 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| ||||| || || | || ||||| || || |||| || || || Sbjct 282277 GTCAATRGTGTCAGAAGATTCAACYTCAAGAGTAATGGTCTTACCAGTCAAAGTCTTRAC 282336 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 282337 GAAGATTTGCAT 282348 Score = 82.4 bits (90), Expect = 9e-11 Identities = 130/192 (68%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || ||||| | |||| || | ||||| || ||||| Sbjct 282386 TCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCYAATTGCTTACCRGCGAAR 282445 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || || | || || || | || | | |||||||| |||||| ||| | ||| Sbjct 282446 ATYAAWCKYTGTTGRTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTTRA-CGTT 282504 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || || || || || | || ||||| || || || | || || || Sbjct 282505 GTCAATRGTRTCRGAAGAYTCAACYTCMARRGTAATGGTCTTACCRGTYAAWGTCTTRAC 282564 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 282565 GAAGATTTGCAT 282576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238265755880