Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03-
01] 19 sequences; 16,592,489 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq3 96.9 4e-15
seq9 93.3 5e-14
>seq3
Length=2118207
Score = 96.9 bits (106), Expect = 4e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||| || | || |||| ||||| || |||||| ||||| |||||||| ||
Sbjct 53442 CCACCTCTCAATCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 53383
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || | |||| || | |||||| || ||||| ||||| | || ||||| | ||
Sbjct 53382 AGGGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGA 53323
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| | ||||||||| |||||| ||||| | | | |||||| || || ||
Sbjct 53322 ATACCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACT 53263
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|||| || ||||| || || || | || || || || ||||||||||||
Sbjct 53262 TCCAAGGTAATGGTCTTACCTGTTAAAGTCTTGACGAAAATTTGCATTTTG 53212
>seq9
Length=507287
Score = 93.3 bits (102), Expect = 5e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||||||||| |||||||| || ||||| | |||| || | ||||| || |||||
Sbjct 282842 TCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAG 282901
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| || ||||| ||||| | || | | |||||||| |||||| ||||| |||
Sbjct 282902 ATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTTGA-CGTT 282960
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || ||| || || || |||| || ||||| || || || | || |||||
Sbjct 282961 GTCAATGGTATCGGAAGACTCAACTTCCAAGGTAATGGTCTTACCGGTTAATGTCTTAAC 283020
Query 46582 AAAGATTTGCATT 46594
||||||||||||
Sbjct 283021 GAAGATTTGCATT 283033
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||||||||| |||||||| || ||||| | |||| || | ||||| ||||||||
Sbjct 281930 TCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAA 281989
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| | || ||||| | || | | |||||||| |||||| ||| | |||
Sbjct 281990 ATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTT-AACGTT 282048
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| ||||| || || | || ||||| || || |||| || |||||
Sbjct 282049 GTCAATGGTGTCAGAAGATTCAACCTCAAGAGTAATGGTCTTACCAGTCAAAGTCTTAAC 282108
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 282109 GAAGATTTGCAT 282120
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||||||||| |||||||| || ||||| | |||| || | ||||| ||||||||
Sbjct 282614 TCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAA 282673
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| | || ||||| | || | | |||||||| |||||| ||| | |||
Sbjct 282674 ATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTT-AACGTT 282732
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| ||| || || || | ||||| || || || |||| || |||||
Sbjct 282733 GTCAATGGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTACCAGTCAAAGTCTTAAC 282792
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 282793 GAAGATTTGCAT 282804
Score = 86.0 bits (94), Expect = 7e-12
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||||||||| |||||||| || ||||| | |||| || | ||||| ||||||||
Sbjct 282158 TCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAA 282217
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| | || || || | || | | |||||||| |||||| ||| | |||
Sbjct 282218 ATCAATCTTTGTTGRTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTT-AACGTT 282276
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| ||||| || || | || ||||| || || |||| || || ||
Sbjct 282277 GTCAATRGTGTCAGAAGATTCAACYTCAAGAGTAATGGTCTTACCAGTCAAAGTCTTRAC 282336
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 282337 GAAGATTTGCAT 282348
Score = 82.4 bits (90), Expect = 9e-11
Identities = 130/192 (68%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||||||||| |||||||| || ||||| | |||| || | ||||| || |||||
Sbjct 282386 TCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCYAATTGCTTACCRGCGAAR 282445
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| || | || || || | || | | |||||||| |||||| ||| | |||
Sbjct 282446 ATYAAWCKYTGTTGRTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTTRA-CGTT 282504
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || || || || || || | || ||||| || || || | || || ||
Sbjct 282505 GTCAATRGTRTCRGAAGAYTCAACYTCMARRGTAATGGTCTTACCRGTYAAWGTCTTRAC 282564
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 282565 GAAGATTTGCAT 282576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238265755880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |