Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq9 197 3e-45 seq3 165 2e-35 >seq9 Length=507287 Score = 197 bits (218), Expect = 3e-45 Identities = 177/222 (80%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | |||||||||||| || ||||| || ||||| || | |||||| Sbjct 281899 TCTCAATCTTAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGT 281958 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| ||||| || | || |||||||||||||||||| || Sbjct 281959 TCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATACC 282018 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||| ||||| ||||||||||| ||| ||| || ||||| Sbjct 282019 TTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATGGTGTCAGAAGATTCAACCTCAAG 282078 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || |||||||| || ||||| | |||||| Sbjct 282079 AGTAATGGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 282120 Score = 196 bits (216), Expect = 1e-44 Identities = 175/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | |||||||||||| || ||||| || ||||| || | |||||| Sbjct 282127 TCTCAATCTYAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGT 282186 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| ||||| || | || |||||| ||||||||||| || Sbjct 282187 TCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGRTCTGGAGGAATACC 282246 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||| ||||| ||||| ||||| ||| ||| || ||||| Sbjct 282247 TTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATRGTGTCAGAAGATTCAACYTCAAG 282306 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || |||||||| || ||||| | |||||| Sbjct 282307 AGTAATGGTCTTACCAGTCAAAGTCTTRACGAAGATTTGCAT 282348 Score = 194 bits (214), Expect = 4e-44 Identities = 176/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | |||||||||||| || ||||| || ||||| || | |||||| Sbjct 282583 TCTCAATCTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGT 282642 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| ||||| || | || |||||||||||||||||| || Sbjct 282643 TCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATACC 282702 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||| ||||| ||||||||||| || || |||||||| Sbjct 282703 TTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATGGTGTCAGACGACTCGACTTCAAG 282762 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || |||||||| || ||||| | |||||| Sbjct 282763 AGTGATAGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 282804 Score = 187 bits (206), Expect = 6e-42 Identities = 175/223 (78%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | |||||||||||| || ||||| || ||||| || | |||||| Sbjct 282811 TCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGT 282870 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| |||||||| | || ||||||||||||||||| || Sbjct 282871 TCTACCGTCTTCCAATTGCTTACCAGCGAAGATTAAACGCTGTTGGTCTGGAGGAATACC 282930 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||||||||| |||||||| || ||| || ||||| | Sbjct 282931 TTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCAACTTCCAA 282990 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| ||||| || || || || || ||||| | ||||||| Sbjct 282991 GGTAATGGTCTTACCGGTTAATGTCTTAACGAAGATTTGCATT 283033 Score = 185 bits (204), Expect = 2e-41 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | |||||||||||| || ||||| || ||||| || | |||||| Sbjct 282355 TCTCAATCTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGT 282414 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| ||||| || | | ||||| ||||||||||| || Sbjct 282415 TCTACCGTCTTCYAATTGCTTACCRGCGAARATYAAWCKYTGTTGRTCTGGAGGAATACC 282474 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||| ||||| ||||| || || ||| || || || | Sbjct 282475 TTCCTTGTCTTGGATCTTGGACTTRACGTTGTCAATRGTRTCRGAAGAYTCAACYTCMAR 282534 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || || || || || ||||| | |||||| Sbjct 282535 RGTAATGGTCTTACCRGTYAAWGTCTTRACGAAGATTTGCAT 282576 >seq3 Length=2118207 Score = 165 bits (182), Expect = 2e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | ||| | |||||||| || || || ||||| || | ||| || Sbjct 53437 TCTCAATCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGT 53378 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | ||||||||| |||||||| | || ||||||||| || ||||| || Sbjct 53377 TCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACC 53318 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || |||||| || ||||||||||| || || ||||| | Sbjct 53317 TTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAA 53258 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| ||||| ||||| ||||| || ||||| | |||||||| Sbjct 53257 GGTAATGGTCTTACCTGTTAAAGTCTTGACGAAAATTTGCATTT 53214 Score = 98.7 bits (108), Expect = 2e-15 Identities = 246/364 (68%), Gaps = 16/364 (4%) Strand=Plus/Minus Query 160514 TGGCACGTTGACATCTTTGACTTTGTCGA--TGCGAAA-AAGCCCGGAGGTGATGACCTG 160570 ||||||| |||||||| ||||| | || | |||| || | ||| || || Sbjct 1785250 TGGCACGCAGACATCTTCGACTTCATTGACATCAGAAAGAATCACGGTAAGGAAGAA--- 1785194 Query 160571 ATGAGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTG 160630 || ||||| ||||| | ||| || | |||| | | ||| | ||||||||||||||| Sbjct 1785193 ATCAGAGCTAGAGATTTGTTCCCAGCTTTGTGGATTCCAGATTTGTTCATGAAGAGAGTG 1785134 Query 160631 AAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTG-ATGATGT 160689 || | ||||| || |||| ||||||| ||| || ||||| || || |||| || || Sbjct 1785133 GAACAGAATGGTGAATGGACTCTTTTCTCTCCAAACGAAGCTCCAGG-CTTGCCAGAAGT 1785075 Query 160690 TTATGGTTCCGAGTTCG-AGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAA 160748 ||| ||| ||| |||| ||| | | || ||| | ||||| | ||| ||||||| | || Sbjct 1785074 TTACGGTGACGAATTCGAAGAGT-TATACGAACGTTACGAGAGAGAAGGAAGAGGTAGAA 1785016 Query 160749 AGGTCGTGAAGGCCCAAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTA 160808 ||| ||||| ||| | ||||| | |||| | | || || || |||| Sbjct 1785015 GCACCGTCAAGGCTCAAAAGTTGTGGTACGCCATCTTGGAGGCTCAGACTGAAACCGGTA 1784956 Query 160809 TGCCCTTTATCGCATACAAGGATGCCATCTGTCGC---AAGAGTAACCAGAAGAACTTTG 160865 || || || ||||||||||| |||| | |||| |||||||||||||| | Sbjct 1784955 CTCCTTTCATGTTGTACAAGGATGC---CTGTAACAAGAAGACCAACCAGAAGAACTTGG 1784899 Query 160866 GAAT 160869 | || Sbjct 1784898 GTAT 1784895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481329910573