Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 205 1e-47 seq5 132 5e-26 >seq3 Length=2118207 Score = 205 bits (226), Expect = 1e-47 Identities = 546/831 (66%), Gaps = 5/831 (1%) Strand=Plus/Plus Query 18685 ACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAAT 18744 ||||| || || ||||| ||||| || || | || || || |||||| || || ||| Sbjct 1740537 ACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCCAAGGAGATGTTTTCCATGAAGTCGAAT 1740596 Query 18745 GGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACA 18804 || || || || || || || || ||| || || | | | || ||| || || || Sbjct 1740597 GGGTTGTTGACGTTGTAAATCTTCTTGTTACCCAAAGCAATCAATAATCTGTCGGCAACG 1740656 Query 18805 AATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCA 18864 |||| | ||| | ||||| ||| ||||| || | || || || | || Sbjct 1740657 AATTCGACGTATTGGCACATCAATTCAGCGTTCATACCCAACAAGGAGACTGGCAAAGCG 1740716 Query 18865 TCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCT 18924 || || | |||||||| || || || || ||||| | || || |||| || || Sbjct 1740717 TCGGTGAAGAATTCTTGCTCGATCTTGACAGCCTCAGTGATGATCTTCTCAACAATAACT 1740776 Query 18925 TCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCC 18984 | || || | | | || || | |||||| || || ||| ||||| || Sbjct 1740777 GGGTCTGGTCTGTTTTGCAAGTGGGAGAATAACAAACAGGCGAAGTCAGTATGTAAACCT 1740836 Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| | ||||| ||||| || || || ||||| ||||||| ||||| || ||| Sbjct 1740837 TCATCTCTGCAGATCAACTCATTGGAGAAAGTCAAACCTGGCATCAAACCTCTCTTCTTT 1740896 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 |||||||| ||||||||||| || ||| ||||| ||||| || || || ||||||||| Sbjct 1740897 AACCAGAAGATAGAAGCAAAAGAACCACTGAAGAAAATACCCTCAACGGCAGCAAAAGCA 1740956 Query 19105 ACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCATTTCAGTGCCCAATCAGC 19163 |||| |||||| || ||| | || || | | | |||||| ||| ||||| ||||| Sbjct 1740957 ACTAATCTTTCACC-GAACAAGGCCTCGTCGTCAGAGATCCATCTCAAGGCCCAGTCAGC 1741015 Query 19164 CTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGT 19223 ||||||| | | ||||| || | || |||| ||| || || | | || | | Sbjct 1741016 CTTCTTTCTGATGCATGGAATGTTGTCAATAGCATTGAAAAGGAAGTCAGCTTCCTTAGG 1741075 Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 || ||||| || | || || || ||| ||| | || || ||||| ||||| || Sbjct 1741076 GTCCTTAACGTAAGTGTCAATTAACAAAGAGTAGGTCTCGGAGTGAATGTTTTCCATCAT 1741135 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343 || || || ||||| ||||| | ||||||| || || || || | | || | || Sbjct 1741136 AATTTGGAAACCGTAGAAACACTTGGCTTCTGGAATTTGGACCTCGGCAGAGAAGTTCTC 1741195 Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAAT 19403 |||||| || || || || || || ||| || || || || || || | | | ||| Sbjct 1741196 GACCAAGTTCTCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCCAAGATACGGGAAAT 1741255 Query 19404 AAAATGTTTTTCATCTGAGGTTAA---TGTATTCCAATCATTAATATCTTTAGATAAATC 19460 || | | |||| | | | || | ||||| ||| | |||| ||| || || Sbjct 1741256 GAAGTATCTTTCGTTCTTGTTCAACTTTTGGTTCCAGTCAGTGGTATCCTTACTCAAGTC 1741315 Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCA 19511 | |||||| | ||||| || || || || || || || ||||| | ||| Sbjct 1741316 AATTTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTACATTTGCCA 1741366 >seq5 Length=1730773 Score = 132 bits (146), Expect = 5e-26 Identities = 225/321 (70%), Gaps = 4/321 (1%) Strand=Plus/Minus Query 48105 TCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCCAGGACA 48163 |||||| | |||| |||| ||||||| |||||||| ||| | | |||| |||||| Sbjct 1418087 TCGTATCTTTTATACAACTCAACAAATTCTTCCCCATA-ACAGTCTGCTAAACCAGGAGC 1418029 Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223 |||| ||| | | || ||||| | |||| ||| |||||| ||| || | ||| Sbjct 1418028 CTCATCTGGAGAAAATAAAGACCATACTTCATTATTCCGTACTCTTTCCATGAACAAATC 1417969 Query 48224 TGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT 48283 || ||||| | | | |||||| || | ||||| |||||||| ||||| ||| | Sbjct 1417968 AGGAATCCATAACCCAAAAAATAAGTCTCGCGTTCTGAGTTCTTCCTTGCCGTGGTTCTT 1417909 Query 48284 TTT-AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTA 48342 || |||| ||||| || | || |||| ||||||||||| |||||||| || | Sbjct 1417908 CTTCAAGTCCAAGATC-TCGAATACGTCAGAGTGCCATGGTTCCAAATATATGGCGAAGG 1417850 Query 48343 CACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTA 48402 ||||||||| ||| || ||||| ||||| | ||| || || |||| || | ||| | | Sbjct 1417849 CACCTGGTCTTTTGTTCCCTCCCTGATCAACATACCTCGCCGTATCATTGAATACTTTAA 1417790 Query 48403 ACATTGGGACAATACCATTTG 48423 ||| || || | ||| ||| Sbjct 1417789 GCATAGGAACCAATCCACTTG 1417769 Score = 131 bits (144), Expect = 2e-25 Identities = 306/457 (67%), Gaps = 11/457 (2%) Strand=Plus/Minus Query 47003 CGCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAA 47062 ||| | || ||||| || || ||||| ||||| || || || |||| ||||||| Sbjct 1419222 CGCCGCTTGTGTTCTCAAGTAGTACATGCCAGTTTTCAATCCCTTGTTCCAGGCATAGAA 1419163 Query 47063 ATGCATACTAGTTAATTTAGAATAACTAGG-TTCTGAAATATGAATATTAAGAGATTGAC 47121 ||| |||||| | ||| | || | || || || || || |||| | ||| Sbjct 1419162 ATGACAACTAGTGAGTTTTCCAAAAGTCGGATTTTGTAAGTAGA-TATTCATGCTTTGCA 1419104 Query 47122 TCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCT 47181 |||||||||||| ||||||||||| |||||||| | ||| || | |||| |||| Sbjct 1419103 GCTGATCAATAAACTTTCCTCTATCAGCCGCCATATCAACAATGACTTTCTGTGAAATCT 1419044 Query 47182 CCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATT---AGTATTTTGAATAG 47238 |||| ||||||||||| | ||| || || | ||||| ||| |||| ||||||| Sbjct 1419043 CCCAAACTGTTTTATACAAGGCTTTTATCTCCTTTGGGATATTCAATATATTCTGAATAG 1418984 Query 47239 ATCCTCCgttttc---tataattttgttttttaattcatttgaccaaagttttcgttcag 47295 | |||||||| ||||| || || | | | || || ||| | | ||| Sbjct 1418983 A---ACCGTTTTCAAGAATAATCTTATTCCTCATTGCAGATGTCCATAAACCTAAATCAA 1418927 Query 47296 ttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGC 47355 | || || ||||||| || || || || || |||||||| || ||||| | Sbjct 1418926 TCAAGTCCTTCAAAAGATACTTGTTCACTATCTGGAACTCTCCAGAAAGAACTCTTCTAG 1418867 Query 47356 TATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTG 47415 | || | |||| ||||| ||||| | |||| ||| |||| |||||||| ||| | Sbjct 1418866 TGTACAAATTAGAAGTATAAGGTTCAAAGCATTCGTTAAAGCCAAGAATTTGAGAAGTAG 1418807 Query 47416 ATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCT 47452 | || || ||||| | ||| ||||| ||| ||||| Sbjct 1418806 AGGCCGTTGGCATAGGTGCCACTAACAAGGAGTTTCT 1418770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108666499160