Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03-
01] 19 sequences; 16,592,489 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq3 205 1e-47
seq5 132 5e-26
>seq3
Length=2118207
Score = 205 bits (226), Expect = 1e-47
Identities = 546/831 (66%), Gaps = 5/831 (1%)
Strand=Plus/Plus
Query 18685 ACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAAT 18744
||||| || || ||||| ||||| || || | || || || |||||| || || |||
Sbjct 1740537 ACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCCAAGGAGATGTTTTCCATGAAGTCGAAT 1740596
Query 18745 GGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACA 18804
|| || || || || || || || ||| || || | | | || ||| || || ||
Sbjct 1740597 GGGTTGTTGACGTTGTAAATCTTCTTGTTACCCAAAGCAATCAATAATCTGTCGGCAACG 1740656
Query 18805 AATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCA 18864
|||| | ||| | ||||| ||| ||||| || | || || || | ||
Sbjct 1740657 AATTCGACGTATTGGCACATCAATTCAGCGTTCATACCCAACAAGGAGACTGGCAAAGCG 1740716
Query 18865 TCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCT 18924
|| || | |||||||| || || || || ||||| | || || |||| || ||
Sbjct 1740717 TCGGTGAAGAATTCTTGCTCGATCTTGACAGCCTCAGTGATGATCTTCTCAACAATAACT 1740776
Query 18925 TCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCC 18984
| || || | | | || || | |||||| || || ||| ||||| ||
Sbjct 1740777 GGGTCTGGTCTGTTTTGCAAGTGGGAGAATAACAAACAGGCGAAGTCAGTATGTAAACCT 1740836
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| | ||||| ||||| || || || ||||| ||||||| ||||| || |||
Sbjct 1740837 TCATCTCTGCAGATCAACTCATTGGAGAAAGTCAAACCTGGCATCAAACCTCTCTTCTTT 1740896
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
|||||||| ||||||||||| || ||| ||||| ||||| || || || |||||||||
Sbjct 1740897 AACCAGAAGATAGAAGCAAAAGAACCACTGAAGAAAATACCCTCAACGGCAGCAAAAGCA 1740956
Query 19105 ACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCATTTCAGTGCCCAATCAGC 19163
|||| |||||| || ||| | || || | | | |||||| ||| ||||| |||||
Sbjct 1740957 ACTAATCTTTCACC-GAACAAGGCCTCGTCGTCAGAGATCCATCTCAAGGCCCAGTCAGC 1741015
Query 19164 CTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGT 19223
||||||| | | ||||| || | || |||| ||| || || | | || | |
Sbjct 1741016 CTTCTTTCTGATGCATGGAATGTTGTCAATAGCATTGAAAAGGAAGTCAGCTTCCTTAGG 1741075
Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283
|| ||||| || | || || || ||| ||| | || || ||||| ||||| ||
Sbjct 1741076 GTCCTTAACGTAAGTGTCAATTAACAAAGAGTAGGTCTCGGAGTGAATGTTTTCCATCAT 1741135
Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343
|| || || ||||| ||||| | ||||||| || || || || | | || | ||
Sbjct 1741136 AATTTGGAAACCGTAGAAACACTTGGCTTCTGGAATTTGGACCTCGGCAGAGAAGTTCTC 1741195
Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAAT 19403
|||||| || || || || || || ||| || || || || || || | | | |||
Sbjct 1741196 GACCAAGTTCTCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCCAAGATACGGGAAAT 1741255
Query 19404 AAAATGTTTTTCATCTGAGGTTAA---TGTATTCCAATCATTAATATCTTTAGATAAATC 19460
|| | | |||| | | | || | ||||| ||| | |||| ||| || ||
Sbjct 1741256 GAAGTATCTTTCGTTCTTGTTCAACTTTTGGTTCCAGTCAGTGGTATCCTTACTCAAGTC 1741315
Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCA 19511
| |||||| | ||||| || || || || || || || ||||| | |||
Sbjct 1741316 AATTTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTACATTTGCCA 1741366
>seq5
Length=1730773
Score = 132 bits (146), Expect = 5e-26
Identities = 225/321 (70%), Gaps = 4/321 (1%)
Strand=Plus/Minus
Query 48105 TCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCCAGGACA 48163
|||||| | |||| |||| ||||||| |||||||| ||| | | |||| ||||||
Sbjct 1418087 TCGTATCTTTTATACAACTCAACAAATTCTTCCCCATA-ACAGTCTGCTAAACCAGGAGC 1418029
Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223
|||| ||| | | || ||||| | |||| ||| |||||| ||| || | |||
Sbjct 1418028 CTCATCTGGAGAAAATAAAGACCATACTTCATTATTCCGTACTCTTTCCATGAACAAATC 1417969
Query 48224 TGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT 48283
|| ||||| | | | |||||| || | ||||| |||||||| ||||| ||| |
Sbjct 1417968 AGGAATCCATAACCCAAAAAATAAGTCTCGCGTTCTGAGTTCTTCCTTGCCGTGGTTCTT 1417909
Query 48284 TTT-AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTA 48342
|| |||| ||||| || | || |||| ||||||||||| |||||||| || |
Sbjct 1417908 CTTCAAGTCCAAGATC-TCGAATACGTCAGAGTGCCATGGTTCCAAATATATGGCGAAGG 1417850
Query 48343 CACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTA 48402
||||||||| ||| || ||||| ||||| | ||| || || |||| || | ||| | |
Sbjct 1417849 CACCTGGTCTTTTGTTCCCTCCCTGATCAACATACCTCGCCGTATCATTGAATACTTTAA 1417790
Query 48403 ACATTGGGACAATACCATTTG 48423
||| || || | ||| |||
Sbjct 1417789 GCATAGGAACCAATCCACTTG 1417769
Score = 131 bits (144), Expect = 2e-25
Identities = 306/457 (67%), Gaps = 11/457 (2%)
Strand=Plus/Minus
Query 47003 CGCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAA 47062
||| | || ||||| || || ||||| ||||| || || || |||| |||||||
Sbjct 1419222 CGCCGCTTGTGTTCTCAAGTAGTACATGCCAGTTTTCAATCCCTTGTTCCAGGCATAGAA 1419163
Query 47063 ATGCATACTAGTTAATTTAGAATAACTAGG-TTCTGAAATATGAATATTAAGAGATTGAC 47121
||| |||||| | ||| | || | || || || || || |||| | |||
Sbjct 1419162 ATGACAACTAGTGAGTTTTCCAAAAGTCGGATTTTGTAAGTAGA-TATTCATGCTTTGCA 1419104
Query 47122 TCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCT 47181
|||||||||||| ||||||||||| |||||||| | ||| || | |||| ||||
Sbjct 1419103 GCTGATCAATAAACTTTCCTCTATCAGCCGCCATATCAACAATGACTTTCTGTGAAATCT 1419044
Query 47182 CCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATT---AGTATTTTGAATAG 47238
|||| ||||||||||| | ||| || || | ||||| ||| |||| |||||||
Sbjct 1419043 CCCAAACTGTTTTATACAAGGCTTTTATCTCCTTTGGGATATTCAATATATTCTGAATAG 1418984
Query 47239 ATCCTCCgttttc---tataattttgttttttaattcatttgaccaaagttttcgttcag 47295
| |||||||| ||||| || || | | | || || ||| | | |||
Sbjct 1418983 A---ACCGTTTTCAAGAATAATCTTATTCCTCATTGCAGATGTCCATAAACCTAAATCAA 1418927
Query 47296 ttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGC 47355
| || || ||||||| || || || || || |||||||| || ||||| |
Sbjct 1418926 TCAAGTCCTTCAAAAGATACTTGTTCACTATCTGGAACTCTCCAGAAAGAACTCTTCTAG 1418867
Query 47356 TATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTG 47415
| || | |||| ||||| ||||| | |||| ||| |||| |||||||| ||| |
Sbjct 1418866 TGTACAAATTAGAAGTATAAGGTTCAAAGCATTCGTTAAAGCCAAGAATTTGAGAAGTAG 1418807
Query 47416 ATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCT 47452
| || || ||||| | ||| ||||| ||| |||||
Sbjct 1418806 AGGCCGTTGGCATAGGTGCCACTAACAAGGAGTTTCT 1418770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108666499160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |