Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq3 159 2e-34 seq5 158 6e-34 >seq3 Length=2118207 Score = 159 bits (176), Expect = 2e-34 Identities = 293/424 (69%), Gaps = 4/424 (1%) Strand=Plus/Plus Query 25889 TTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 |||||| |||| | | ||| ||| |||| || || ||| ||| ||| || ||||||||| Sbjct 1785099 TTTGGAGAGAAAAGAGTCCATTCACCATTCTGTTCCACTCTCTTCATGAACAAATCTGGA 1785158 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 ||||||| || || |||||||| ||||| |||||||| || |||||||||||| | Sbjct 1785159 ATCCACAAAGCTGGGAACAAATCTCTAGCTCTGATTTCTTCCTTACCGTGATTCTTTCTG 1785218 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCT 26068 | || | ||| || || || |||| ||||||||| || || || | |||||| |||| Sbjct 1785219 ATGTCAATGAAGTCGAAGATGTCTGCGTGCCATGGCTCCAAGTACAAGGCAAAAGCACCT 1785278 Query 26069 TTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATT 26128 | || |||||||| || |||||||| ||||| | ||||| || | |||| Sbjct 1785279 GGACGCTTGTTACCACCTTGGTCAACGTATCTAGCAGTGTTGTTGAAGACACGAACCATT 1785338 Query 26129 GGAACTAATCCAGTTGAAAAT-CCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 |||| |||| | |||| | | ||||| || | | ||| | | || || || | || Sbjct 1785339 GGAA-TAATACCGTTGGAGGTACCGTTAGTACCAGCAATGTAAGCACCAGTAGAACGGAT 1785397 Query 26188 ATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA-ATCTGAAA 26246 | |||| || | ||| || |||||||| | || ||||| ||||| ||| || Sbjct 1785398 GTTGTGAATGTGCAAACCAATACCACCAGCACTCTTGGAAATCAAGGCACAGGTCTTCAA 1785457 Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306 || ||| |||| || | || || | |||||| | | | ||||||||||| | Sbjct 1785458 -GGTGTCGTAAATACCATCAATAGAGTCGTCCTTCATTGCGACAAGGAAACAAGAAGACA 1785516 Query 26307 ATTG 26310 ||| Sbjct 1785517 TTTG 1785520 Score = 89.7 bits (98), Expect = 3e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCA 25075 |||||||| | || |||||||| | | ||| ||||| |||| || |||||||| Sbjct 1784250 AATTCTCCTGCTAACACTCTTCTAGAGTAGATGTTAGAAGTATATGGCTCGAAACATTCG 1784309 Query 25076 TTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTT 25135 || || || || |||||||||||||| || ||||||||| || | ||| | || ||| Sbjct 1784310 TTGTTACCCAATATTTGAGAAGTAGAAGCGGTTGGCATTGGAGCAACTAACAAGGAGTTT 1784369 Query 25136 CTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179 |||||||| | || | | || || || ||| |||||| || Sbjct 1784370 CTCAAACCGTGCTTGGCCAACTTCTGCTTCAATGCATCCCAGTC 1784413 >seq5 Length=1730773 Score = 158 bits (174), Expect = 6e-34 Identities = 248/352 (70%), Gaps = 5/352 (1%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 || |||| | |||||| ||| | |||| | | ||| | ||||| || ||||| || Sbjct 1418025 ATCTGGAGAAAATAAAGACCATACTTCATTATTCCGTACTCTTTCCATGAACAAATCAGG 1417966 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 |||||| | || ||||||| |||| || ||| | |||||| || ||||| ||||| || Sbjct 1417965 AATCCATAACCCAAAAAATAAGTCTCGCGTTCTGAGTTCTTCCTTGCCGTGGTTCTTCTT 1417906 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | || |||| || || | || |||||||||||||| ||||| || || || ||| Sbjct 1417905 CAAGTCCAAGATCTCGAATACGTCAGAGTGCCATGGTTCCAAATATATGGCGAAGGCACC 1417846 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 | |||||| || || ||||| || || || || || |||||||| ||||| | ||| Sbjct 1417845 TGGTCTTTTGTTCCCTCCCTGATCAACATACCTCGCCGTATCATTGAATACTTTAAGCAT 1417786 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCC-TGTCGATCTAA 26186 ||||| |||||| ||| |||||| || || || | | ||| |||| ||| | Sbjct 1417785 AGGAACCAATCCACTTGCCGTTCCGTTAGTACTGGCGATGTGAGCTCCGTGTC-CTCTTA 1417727 Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAAT---AGCTGC 26235 ||| |||| |||| | || ||||| || | | |||||||| |||||| Sbjct 1417726 TATTGTGAACATGTAAGCCTATTCCTCCTGACGCCTTTGAAATTAAAGCTGC 1417675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039941405425