Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3 185 1e-41 seq9 140 5e-28 >seq3 Length=2118207 Score = 185 bits (204), Expect = 1e-41 Identities = 559/858 (65%), Gaps = 26/858 (3%) Strand=Plus/Plus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 ||| |||| ||| || | |||| | ||||||||||| || ||||| || |||| || || Sbjct 1740518 AGCCTTTTGGTAGTCACTGACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCCAAGGAGAT 1740577 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATT--AATTCG 17977 | ||| || || ||||| || || || ||| | ||||||| || | Sbjct 1740578 GTTTTCCATGAAGTCGAATGGGTTGTTGACGTTGTAAA--TCTTCTTGTTACCCAAAGCA 1740635 Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037 |||||||| || || || |||||||| ||||| ||||||| || |||||||| Sbjct 1740636 ATCAATAATCTGTCGGCAACGAATTCGACGTATTGGCACATCAATTCAGCGTTCATACCC 1740695 Query 18038 AGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTT 18097 | | || || | ||| || | | ||||||| ||| |||| |||| ||| | Sbjct 1740696 AACAAGGAGACTGGCAAAGCGTCGGTGAAGAATTCTTGCTCGATCTTGACAGCCTCAGTG 1740755 Query 18098 ATTATGTTTATTACCCTAGAT---TTTGG-CAATTTATTAATTATGTGATTATAATATAA 18153 || || || || || | | ||| | ||| || | | || |||| Sbjct 1740756 ATGATCTTCTCAACAATAACTGGGTCTGGTCTGTTTTGCAAGTGGGAGA-------ATAA 1740808 Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 ||||| || || ||||| |||||||||||||||||| | || || || || || || Sbjct 1740809 CAAACAGGCGAAGTCAGTATGTAAACCTTCATCTCTGCAGATCAACTCATTGGAGAAAGT 1740868 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 || || ||||| | |||||| || |||| ||| || || || || ||| || | || Sbjct 1740869 CAAACCTGGCATCAAACCTCTCTTCTTTAACCAGAAGATAGAAGCAAAAGAACCACTGAA 1740928 Query 18274 GAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333 ||| |||||||||||| || || || | |||||||||| | || | | | | | Sbjct 1740929 GAAAATACCCTCAACGGCAGCAAAAGCAACTAATCTTTCACCGAACAAGGCCTCGTCG-T 1740987 Query 18334 CAG-TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392 ||| |||||| | ||||| || | | || || || || | || |||| Sbjct 1740988 CAGAGATCCATCTCAAGGCCCAGTCAGCCTTCTTTCTGATGCATGGAATGTTGTCAATAG 1741047 Query 18393 CATT---AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAG 18449 |||| || || ||| | ||| || | || || | |||||||| |||||||||| Sbjct 1741048 CATTGAAAAGGAAGTCAGC---TTCCTTAGGGTCCTTAACGTAAGTGTCAATTAACAAAG 1741104 Query 18450 AATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT 18509 | || | || || || ||| ||||||| || || |||| || || | | || | Sbjct 1741105 AGTAGGTCTCGGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTGGCTT 1741164 Query 18510 CGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAG 18569 | ||| ||| | |||| | | || | || ||||| ||||| || || |||||||||| Sbjct 1741165 CTGGAATTTGGACCTCGGCAGAGAAGTTCTCGACCAAGTTCTCGTTGACAATACCGTCAG 1741224 Query 18570 CAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATT-- 18627 | ||||| || ||||| | | |||||| | | |||| || | || | || Sbjct 1741225 AGGCAGCGAAGAAAGCCAAGATACGGGAAATGAAGTATCTTTCGTTCTTGTTCAACTTTT 1741284 Query 18628 -GTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATT 18686 |||||| ||| |||| || | |||| |||||| | ||||| || || | || Sbjct 1741285 GGTTCCAGTCAGTGGTATCCTTACTCAAGTCAATTTCTTCGGCGGTCCAGAAGGAGGCTT 1741344 Query 18687 CGGCCTGTTTGTACATTT 18704 |||||| |||||||||| Sbjct 1741345 CGGCCTTCTTGTACATTT 1741362 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | || || || || || || || ||||| || |||||||| Sbjct 53213 AAAATGCAAATTTTCGTCAAGACTTTAACAGGTAAGACCATTACCTTGGAAGTCGAGTCC 53272 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || || || || || || || ||||| || || || || Sbjct 53273 TCCGACACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGTATTCCACCTGAC 53332 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | || ||||||||| | ||||| ||||| | || || || Sbjct 53333 CAACAAAGATTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACCCTTTCTGACTAC 53392 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || || ||| | || | || || || |||||||| ||||| |||| Sbjct 53393 AACATCCAGAAGGAGTCCACCTTGCACTTGGTCTTAAGATTGAGAGGTGGTG 53444 >seq9 Length=507287 Score = 140 bits (154), Expect = 5e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || |||||||| || || ||||| | || || ||| |||| Sbjct 282120 ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACCATTACTCTTGAGGTTGAATCTTCT 282061 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| || ||||| || |||||||| ||| Sbjct 282060 GACACCATTGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 282001 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||||||||||| | ||||| |||||| | || || || | Sbjct 282000 CAAAGATTGATTTTCGCCGGTAAGCAATTAGAAGACGGTAGAACTCTTTCTGACTACA-- 281943 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| ||||| |||||||| ||||| ||| Sbjct 281942 ACATCCAAAAGGAATCCACTCTTCACTTAGTTTTAAGATTGAGAGGTGGT 281893 Score = 138 bits (152), Expect = 2e-27 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||||||| || || ||||| | || || ||| |||| Sbjct 282348 ATGCAAATCTTCGTYAAGACTTTGACTGGTAAGACCATTACTCTTGARGTTGAATCTTCT 282289 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| || ||||| || |||||||| ||| Sbjct 282288 GACACYATTGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGAYCAA 282229 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||||||||||| | ||||| |||||| | || || || | Sbjct 282228 CAAAGATTGATTTTCGCCGGTAAGCAATTAGAAGACGGTAGAACTCTTTCTGACTACA-- 282171 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| ||||| || ||||| ||||| ||| Sbjct 282170 ACATCCAAAAGGAATCCACTCTTCACTTAGTTTTRAGATTGAGAGGTGGT 282121 Score = 134 bits (148), Expect = 2e-26 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || |||||||| || ||||| || | |||||||| ||| Sbjct 282804 ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACTATCACTCTTGAAGTCGAGTCGTCT 282745 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| || ||||| || |||||||| ||| Sbjct 282744 GACACCATTGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 282685 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||||||||||| | ||||| |||||| | || || || | Sbjct 282684 CAAAGATTGATTTTCGCCGGTAAGCAATTAGAAGACGGTAGAACTCTTTCTGACTACA-- 282627 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| ||||| || ||||| ||||| ||| Sbjct 282626 ACATCCAAAAGGAATCCACTCTTCACTTAGTTTTGAGATTGAGAGGTGGT 282577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871826180400