Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03-
01] 19 sequences; 16,592,489 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq3 185 1e-41
seq9 140 5e-28
>seq3
Length=2118207
Score = 185 bits (204), Expect = 1e-41
Identities = 559/858 (65%), Gaps = 26/858 (3%)
Strand=Plus/Plus
Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919
||| |||| ||| || | |||| | ||||||||||| || ||||| || |||| || ||
Sbjct 1740518 AGCCTTTTGGTAGTCACTGACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCCAAGGAGAT 1740577
Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATT--AATTCG 17977
| ||| || || ||||| || || || ||| | ||||||| || |
Sbjct 1740578 GTTTTCCATGAAGTCGAATGGGTTGTTGACGTTGTAAA--TCTTCTTGTTACCCAAAGCA 1740635
Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037
|||||||| || || || |||||||| ||||| ||||||| || ||||||||
Sbjct 1740636 ATCAATAATCTGTCGGCAACGAATTCGACGTATTGGCACATCAATTCAGCGTTCATACCC 1740695
Query 18038 AGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTT 18097
| | || || | ||| || | | ||||||| ||| |||| |||| ||| |
Sbjct 1740696 AACAAGGAGACTGGCAAAGCGTCGGTGAAGAATTCTTGCTCGATCTTGACAGCCTCAGTG 1740755
Query 18098 ATTATGTTTATTACCCTAGAT---TTTGG-CAATTTATTAATTATGTGATTATAATATAA 18153
|| || || || || | | ||| | ||| || | | || ||||
Sbjct 1740756 ATGATCTTCTCAACAATAACTGGGTCTGGTCTGTTTTGCAAGTGGGAGA-------ATAA 1740808
Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213
||||| || || ||||| |||||||||||||||||| | || || || || || ||
Sbjct 1740809 CAAACAGGCGAAGTCAGTATGTAAACCTTCATCTCTGCAGATCAACTCATTGGAGAAAGT 1740868
Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273
|| || ||||| | |||||| || |||| ||| || || || || ||| || | ||
Sbjct 1740869 CAAACCTGGCATCAAACCTCTCTTCTTTAACCAGAAGATAGAAGCAAAAGAACCACTGAA 1740928
Query 18274 GAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333
||| |||||||||||| || || || | |||||||||| | || | | | | |
Sbjct 1740929 GAAAATACCCTCAACGGCAGCAAAAGCAACTAATCTTTCACCGAACAAGGCCTCGTCG-T 1740987
Query 18334 CAG-TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392
||| |||||| | ||||| || | | || || || || | || ||||
Sbjct 1740988 CAGAGATCCATCTCAAGGCCCAGTCAGCCTTCTTTCTGATGCATGGAATGTTGTCAATAG 1741047
Query 18393 CATT---AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAG 18449
|||| || || ||| | ||| || | || || | |||||||| ||||||||||
Sbjct 1741048 CATTGAAAAGGAAGTCAGC---TTCCTTAGGGTCCTTAACGTAAGTGTCAATTAACAAAG 1741104
Query 18450 AATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT 18509
| || | || || || ||| ||||||| || || |||| || || | | || |
Sbjct 1741105 AGTAGGTCTCGGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTGGCTT 1741164
Query 18510 CGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAG 18569
| ||| ||| | |||| | | || | || ||||| ||||| || || ||||||||||
Sbjct 1741165 CTGGAATTTGGACCTCGGCAGAGAAGTTCTCGACCAAGTTCTCGTTGACAATACCGTCAG 1741224
Query 18570 CAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATT-- 18627
| ||||| || ||||| | | |||||| | | |||| || | || | ||
Sbjct 1741225 AGGCAGCGAAGAAAGCCAAGATACGGGAAATGAAGTATCTTTCGTTCTTGTTCAACTTTT 1741284
Query 18628 -GTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATT 18686
|||||| ||| |||| || | |||| |||||| | ||||| || || | ||
Sbjct 1741285 GGTTCCAGTCAGTGGTATCCTTACTCAAGTCAATTTCTTCGGCGGTCCAGAAGGAGGCTT 1741344
Query 18687 CGGCCTGTTTGTACATTT 18704
|||||| ||||||||||
Sbjct 1741345 CGGCCTTCTTGTACATTT 1741362
Score = 95.1 bits (104), Expect = 2e-14
Identities = 160/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
||||||||||| || | || || || || || || || ||||| || ||||||||
Sbjct 53213 AAAATGCAAATTTTCGTCAAGACTTTAACAGGTAAGACCATTACCTTGGAAGTCGAGTCC 53272
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|| || | ||| || || || || || || || || ||||| || || || ||
Sbjct 53273 TCCGACACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGTATTCCACCTGAC 53332
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|||||||||||||| | || ||||||||| | ||||| ||||| | || || ||
Sbjct 53333 CAACAAAGATTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACCCTTTCTGACTAC 53392
Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
|| || || ||| | || | || || || |||||||| ||||| ||||
Sbjct 53393 AACATCCAGAAGGAGTCCACCTTGCACTTGGTCTTAAGATTGAGAGGTGGTG 53444
>seq9
Length=507287
Score = 140 bits (154), Expect = 5e-28
Identities = 170/230 (74%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || |||| || |||||||| || || ||||| | || || ||| ||||
Sbjct 282120 ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACCATTACTCTTGAGGTTGAATCTTCT 282061
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||| || || || ||||| || ||||| || |||||||| |||
Sbjct 282060 GACACCATTGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 282001
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||||| ||||||||||| | ||||| |||||| | || || || |
Sbjct 282000 CAAAGATTGATTTTCGCCGGTAAGCAATTAGAAGACGGTAGAACTCTTTCTGACTACA-- 281943
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
| ||||||| || | || ||||| ||||| |||||||| ||||| |||
Sbjct 281942 ACATCCAAAAGGAATCCACTCTTCACTTAGTTTTAAGATTGAGAGGTGGT 281893
Score = 138 bits (152), Expect = 2e-27
Identities = 168/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || |||||||| || || ||||| | || || ||| ||||
Sbjct 282348 ATGCAAATCTTCGTYAAGACTTTGACTGGTAAGACCATTACTCTTGARGTTGAATCTTCT 282289
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||| || || || ||||| || ||||| || |||||||| |||
Sbjct 282288 GACACYATTGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGAYCAA 282229
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||||| ||||||||||| | ||||| |||||| | || || || |
Sbjct 282228 CAAAGATTGATTTTCGCCGGTAAGCAATTAGAAGACGGTAGAACTCTTTCTGACTACA-- 282171
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
| ||||||| || | || ||||| ||||| || ||||| ||||| |||
Sbjct 282170 ACATCCAAAAGGAATCCACTCTTCACTTAGTTTTRAGATTGAGAGGTGGT 282121
Score = 134 bits (148), Expect = 2e-26
Identities = 169/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || |||| || |||||||| || ||||| || | |||||||| |||
Sbjct 282804 ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACTATCACTCTTGAAGTCGAGTCGTCT 282745
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||| || || || ||||| || ||||| || |||||||| |||
Sbjct 282744 GACACCATTGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 282685
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||||| ||||||||||| | ||||| |||||| | || || || |
Sbjct 282684 CAAAGATTGATTTTCGCCGGTAAGCAATTAGAAGACGGTAGAACTCTTTCTGACTACA-- 282627
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
| ||||||| || | || ||||| ||||| || ||||| ||||| |||
Sbjct 282626 ACATCCAAAAGGAATCCACTCTTCACTTAGTTTTGAGATTGAGAGGTGGT 282577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871826180400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |