Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq9 134 2e-26 seq3 122 2e-22 >seq9 Length=507287 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| || || || | ||| | || || || || || || Sbjct 282803 ATACCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 282862 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| |||||||| |||||||| || ||||| | ||||||||| || Sbjct 282863 GAAAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAGATTAAACGCTGTTGGTCTGGA 282922 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || || ||||| || || || Sbjct 282923 GGAATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCA 282982 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTA 172076 ||||| | |||||||| ||||| |||||||| |||| ||| || |||||| ||||| Sbjct 282983 ACTTCCAAGGTAATGGTCTTACCGGTTAATGTCTTAACGAAGATTTGCATTGTATTA 283039 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | || ||| ||||| || | ||| | || || || || || || || Sbjct 281893 ACCACCTCTCAATCTTAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGA 281952 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || |||| || ||||| ||||| || ||||| ||||| |||||||| || || Sbjct 281953 AAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGG 282012 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| || || || || || || || || || ||||| || Sbjct 282013 AATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATGGTGTCAGAAGATTCAAC 282072 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||||||| |||||||| || || |||| ||| || ||||| Sbjct 282073 CTCAAGAGTAATGGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 282120 Score = 122 bits (134), Expect = 2e-22 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || ||||| || | ||| | || || || || || || Sbjct 282119 ATACCACCTCTCAATCTYAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 282178 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| || ||||| ||||| || ||||| ||||| ||||| || || Sbjct 282179 GAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGRTCTGGA 282238 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || || || || || ||||| Sbjct 282239 GGAATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATRGTGTCAGAAGATTCA 282298 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||||||| |||||||| || || || | ||| || ||||| Sbjct 282299 ACYTCAAGAGTAATGGTCTTACCAGTCAAAGTCTTRACGAAGATTTGCAT 282348 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || ||||| || | ||| | || || || || || || Sbjct 282575 ATACCACCTCTCAATCTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 282634 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 282635 GAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGA 282694 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || || || || ||||| || Sbjct 282695 GGAATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATGGTGTCAGACGACTCG 282754 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || || |||||||| || || |||| ||| || ||||| Sbjct 282755 ACTTCAAGAGTGATAGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 282804 Score = 114 bits (126), Expect = 2e-20 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || ||||| || | ||| | || || || || || || Sbjct 282347 ATACCACCTCTCAATCTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 282406 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| || ||||| ||||| || || || || | ||||| || || Sbjct 282407 GAAAGAGTTCTACCGTCTTCYAATTGCTTACCRGCGAARATYAAWCKYTGTTGRTCTGGA 282466 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || || || || || || || Sbjct 282467 GGAATACCTTCCTTGTCTTGGATCTTGGACTTRACGTTGTCAATRGTRTCRGAAGAYTCA 282526 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||| ||||| || || || || | ||| || ||||| Sbjct 282527 ACYTCMARRGTAATGGTCTTACCRGTYAAWGTCTTRACGAAGATTTGCAT 282576 >seq3 Length=2118207 Score = 122 bits (134), Expect = 2e-22 Identities = 175/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 171826 TTTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAG 171885 ||||| ||| || ||||||||| | || ||| || || || || || | ||| || Sbjct 53459 TTTTTCTCTTCTTACCACCACCTCTCAATCTTAAGACCAAGTGCAAGGTGGACTCCTTCT 53400 Query 171886 AAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATC 171945 || || || || || | | || |||| ||||| || |||||||| || || |||| Sbjct 53399 GGATGTTGTAGTCAGAAAGGGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATC 53340 Query 171946 TCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 172005 | |||||||||||||| || ||||| || || || || || || ||||| || | Sbjct 53339 TTTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGG 53280 Query 172006 TATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCT 172065 | || || || || ||||| | |||||||| ||||| ||||| || || | ||| || | Sbjct 53279 TGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTACCTGTTAAAGTCTTGACGAAAATTT 53220 Query 172066 GCATTTT 172072 ||||||| Sbjct 53219 GCATTTT 53213 Score = 116 bits (128), Expect = 7e-21 Identities = 350/537 (65%), Gaps = 5/537 (1%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| ||| ||| | || ||||| ||||| || || || | || || || Sbjct 1740522 TTTTGGTAGTCACTGACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCCAAGGAGATGTTT 1740581 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATAT-AA 38950 | ||| || || ||||| || ||| || ||| || || | || | | | || || Sbjct 1740582 TCCATGAAGTCGAATGGGTTGTTGACGTTGTAA-ATCTTCTTGTTACCCAAAGCAATCAA 1740640 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 |||||| ||||| || ||||| || ||||| |||| |||||| ||||||||||| || Sbjct 1740641 TAATCTGTCGGCAACGAATTCGACGTATTGGCACATCAATTCAGCGTTCATACCCAACAA 1740700 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | ||| || || || | ||||||| || || | ||||| | | || || Sbjct 1740701 GGAGACTGGCAAAGCGTCGGTGAAGAATTCTTGCTCGATCTTGACAGCCTCAGTGATGAT 1740760 Query 39071 cataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGC 39130 | | | | || | | | | | || | || | ||| ||||| || Sbjct 1740761 CTTCTCAACAATAACTGGGTCTGGTCTGTTTTGCAAGTGG---GAGAATAACAAACAGGC 1740817 Query 39131 AAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 39190 || || |||||||||||||| || || | || || ||||| ||||| || ||||| Sbjct 1740818 GAAGTCAGTATGTAAACCTTCATCTCTGCAGATCAACTCATTGGAGAAAGTCAAACCTGG 1740877 Query 39191 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 39250 ||| || |||||||| || | ||| || || || |||||| || | ||||| ||||| Sbjct 1740878 CATCAAACCTCTCTTCTTTAACCAGAAGATAGAAGCAAAAGAACCACTGAAGAAAATACC 1740937 Query 39251 CTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCA 39310 ||| || ||||| || | || |||| | || |||| | || || | ||||| Sbjct 1740938 CTCAACGGCAGCAAAAGCAACTAATCTTTCACCGAACAAGGCCTCGTCGTCAGAGATCCA 1740997 Query 39311 ATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 | | |||||| || || || ||| |||| | || || || || ||||| || || Sbjct 1740998 TCTCAAGGCCCAGTCAGCCTTCTTTCTGATGCATGGAATGTTGTCAATAGCATTGAA 1741054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135785030200