Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10 120 9e-22 seq3 113 1e-19 >seq10 Length=251175 Score = 120 bits (132), Expect = 9e-22 Identities = 121/157 (77%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | || ||| |||||||| || ||||| |||||||| ||||| ||| Sbjct 220948 AGAATTTCCTTAAGACGAGGAACACCCAAAGTAACGTT---CTTGGACGACACACCGGCA 220892 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 | |||||||| |||| || | |||||||| ||||||||||||| ||| || ||||| Sbjct 220891 TAATGGAAAGTGTTCAACGTCATTTGAGTAGCTGGCTCACCAATAGATTGAGCAGCAATG 220832 Query 301933 ATACCAACCATTTCTCCTGGTGCTACAATAGACTTCT 301969 | |||||||||||| || || |||||||| |||| Sbjct 220831 ACACCAACCATTTCACCAGGATGAACAATAGATTTCT 220795 Score = 91.5 bits (100), Expect = 4e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || ||||||| | || | |||||||| |||||||||||||| | || || Sbjct 220178 CATGATATCTTCCAAAGCTTTAACCAAACGACGTTGAATATAACCAGTCTCCGCAGTCTT 220119 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| ||||| | | |||| ||||||| || ||||| | ||||| || Sbjct 220118 CACAGCAGTATCAATAAGACCTTCTCTACCAGCCATAGCGTGAAAGAAGAACTCTTGTGG 220059 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | || | | |||| ||||||||||||| | || || |||| ||| Sbjct 220058 AGTCAATCCTCTTAAGTAGGAATTCTCAACGAAACCCTTAGATTCTGGAGAATAGTCATC 219999 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||| || || || || | || | || || | || |||| |||||||| || ||||| Sbjct 219998 CTTCGTGAAATGAGGTAAAGTTCGGTCAGCAAAACCAAATGGAATACGCTTACCTTCAAC 219939 >seq3 Length=2118207 Score = 113 bits (124), Expect = 1e-19 Identities = 207/303 (68%), Gaps = 3/303 (1%) Strand=Plus/Plus Query 156026 TGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCG 156082 |||||||| |||| |||||| ||| | |||| ||||| || || || || | Sbjct 1785251 TGGCTCCAAGTACAAGGCAAAAGCACCTGGACGCTTGTTACCACCTTGGTCAACGTATCT 1785310 Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 |||||| || |||||||||| | ||| ||||||||||| ||||| || || || || || Sbjct 1785311 AGCAGTGTTGTTGAAGACACGAACCATTGGAATAATACCGTTGGAGGTACCGTTAGTACC 1785370 Query 156143 GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCA 156202 ||| | | ||||| || || | || ||||| || | ||||||||||| | | Sbjct 1785371 AGCAATGTAAGCACCAGTAGAACGGATGTTGTGAATGTGCAAACCAATACCACCAGCACT 1785430 Query 156203 TTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262 || ||||| || || ||| | || | | ||||||| |||||||| || || | Sbjct 1785431 CTTGGAAATCAAGGCACAGGTCTTCAAGGTGTCGTAAATACCATCAATAGAGTCGTCCTT 1785490 Query 156263 CATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGT 156322 ||||| | || | || ||| | ||| || ||| || ||||||||||| | || Sbjct 1785491 CATTGCGACAAGGAAACAAGAAGACATTTGTGGAGATGGGGTACCAGCGTTGAACAAAGT 1785550 Query 156323 AGG 156325 ||| Sbjct 1785551 AGG 1785553 Score = 87.8 bits (96), Expect = 5e-12 Identities = 121/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACA 155647 ||||| |||| |||||| || ||| |||| || | | ||| || || |||||||| Sbjct 1784814 ATAGAGGCCAAATTACAGACAGCAACTTCCTCTGGAGAGGA-GTACTCGACGATCTCACA 1784872 Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707 |||| ||||||| ||| || | || || ||||||||||| | || ||||||| || Sbjct 1784873 ACACAAGTTAGAAGACTTAATTATACCCAAGTTCTTCTGGTTGGTCTTCTTGTTACAGGC 1784932 Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCA 155754 ||||||||| | ||| | || || || || || |||| || |||| Sbjct 1784933 ATCCTTGTACAACATGAAAGGAGTACCGGTTTCAGTCTGAGCCTCCA 1784979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817241704403