Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq4 98.7 8e-16 >seq3 Length=2118207 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || ||||| |||||||| || || ||||||||| | ||| ||| | Sbjct 53213 AAAATGCAAATTTTCGTCAAGACTTTAACAGGTAAGACCATTACCTTGGAAGTCGAGTCC 53272 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || || ||||| ||||| ||||| | || || Sbjct 53273 TCCGACACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGTATTCCACCTGAC 53332 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||| | || | || ||||| ||| |||| || | ||||| | | || ||| Sbjct 53333 CAACAAAGATTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACCCTTTCTGACTAC 53392 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || || |||||| |||| |||||| || |||| || Sbjct 53393 AACATCCAGAAGGAGTCCACCTTGCACTTGGTCTTAAGATTGAGAGGTGG 53442 >seq4 Length=1946329 Score = 98.7 bits (108), Expect = 8e-16 Identities = 180/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 34351 ACAAACTTGCGGATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCG 34410 || |||||| ||||||||| || | ||| || |||| | |||||| || | ||| Sbjct 735505 ACGAACTTGTTGATGAAACCGTCCAAGGCGTCTTGCAACTCAGTGGAGTCATGAGCACCG 735446 Query 34411 TTGACGATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCG 34470 ||||| | | | || ||||| | | |||| | | ||| || |||| |||| ||||| Sbjct 735445 TTGACTAAGTAACGGTCGTTGGTCTCGTCGATATTGGATTGAGCACCCAACTCGGACCCG 735386 Query 34471 AAGTACTTTGTCG-GGTAAATGGCCGGACGT----CCAAGCGCCTTGGCGATTTCGGGCA 34525 |||||| ||| || |||| || || || ||||| | |||| | ||||| || Sbjct 735385 AAGTAC-TTGACGACGTAA---GCTGGGGGTCTACCCAAG-GATCTGGCCACTTCGGACA 735331 Query 34526 TGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCG 34585 |||||| ||| |||||||||| ||||| || | ||||| ||||| ||| | | Sbjct 735330 AGTTGACAATGGCAGTCTTGATACCGTTACCTCTACCTTCAGTCTTGGACTGGATTGGAG 735271 Query 34586 GCATTTTGTAGCGGTAGAA 34604 |||| ||||| ||||| || Sbjct 735270 GCATCTTGTAACGGTAAAA 735252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841504401367