Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03-
01] 19 sequences; 16,592,489 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq9 116 3e-21
seq3 86.0 5e-12
>seq9
Length=507287
Score = 116 bits (128), Expect = 3e-21
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || ||||| | | || || ||||| |||||||| ||||| ||||| || || | |
Sbjct 282122 CCACCTCTCAATCTYAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAA 282181
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || | | || || | ||| || || || | ||||||||||| || || || |||
Sbjct 282182 AGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGRTCTGGAGGA 282241
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
||||| || |||||||| | || || || | || | ||||||||| ||| ||
Sbjct 282242 ATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATRGTGTCAGAAGATTCAACY 282301
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||||| || || || ||||| || || || || || || |||||
Sbjct 282302 TCAAGAGTAATGGTCTTACCAGTCAAAGTCTTRACGAAGATTTGCAT 282348
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || ||||| | || || || ||||| |||||||| ||||| ||||| || || | |
Sbjct 282578 CCACCTCTCAATCTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAA 282637
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || | | || || | ||| || || || | ||||||||||| || || || |||
Sbjct 282638 AGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGA 282697
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
||||| || |||||||| | || || || | || | |||||||| || |||
Sbjct 282698 ATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATGGTGTCAGACGACTCGACT 282757
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||||| ||||| || ||||| || || ||||| || || |||||
Sbjct 282758 TCAAGAGTGATAGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 282804
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615
||| || || ||||| | | || || ||||| |||||||| ||||| ||||| || ||
Sbjct 281890 TTGACCACCTCTCAATCTTAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTC 281949
Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675
| || || | | || || | ||| || || || | ||||||||||| || || ||
Sbjct 281950 AGAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGG 282009
Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735
|||||||| || |||||||| | || || || | || | ||||||||| |||
Sbjct 282010 AGGAATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATGGTGTCAGAAGATTC 282069
Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| |||||||| || || || ||||| || || ||||| || || |||||
Sbjct 282070 AACCTCAAGAGTAATGGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 282120
>seq3
Length=2118207
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || ||||| | | ||||| || | ||||| || || || ||||| || || | |
Sbjct 53442 CCACCTCTCAATCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 53383
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| | | || || | || || ||||| | ||||||||||| || || || |||
Sbjct 53382 AGGGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGA 53323
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
||||| || ||||| || | || |||||| | || | ||||| || || |||
Sbjct 53322 ATACCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACT 53263
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| | || || || || || ||||| || || || || || ||||||||
Sbjct 53262 TCCAAGGTAATGGTCTTACCTGTTAAAGTCTTGACGAAAATTTGCATTTT 53213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385219110797679
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |