Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3 129 1e-24 seq10 111 4e-19 >seq3 Length=2118207 Score = 129 bits (142), Expect = 1e-24 Identities = 425/655 (65%), Gaps = 7/655 (1%) Strand=Plus/Minus Query 110510 ACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGA 110569 |||| || ||||||| || ||| | | ||| || || || |||||||| |||||||| || Sbjct 1785521 ACAAATGTCTTCTTGTTTCCTTGTCGCAATGAAGGACGACTCTATTGATGGTATTTACGA 1785462 Query 110570 TGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTC 110628 | ||| |||| ||| | ||||| || | |||| || |||||| | ||| ||| Sbjct 1785461 CAC-CTTGAAGACCTGTGCCTTGATTTCCAAGAGTGCTGGTGGTATTGGTTTGCACATTC 1785403 Query 110629 ATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTG 110688 | | || || || | || || | || || | || ||| | || | || || Sbjct 1785402 ACAACATCCGTTCTACTGGTGCTTACATTGCTGGTACTAACGGTACCTCCAACGGTATTA 1785343 Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGA 110745 |||||||| | | ||||||||| ||||||| | ||| || | ||||||||| ||| Sbjct 1785342 TTCCAATGGTTCGTGTCTTCAACAACACTGCTAGATACGTTGACCAAGGTGGTAACAAGC 1785283 Query 110746 GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 | || | ||||| | || | || || ||||| |||| || || || ||| | | Sbjct 1785282 GTCCAGGTGCTTTTGCCTTGTACTTGGAGCCATGGCACGCAGACATCTTCGACTTCATTG 1785223 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 | | | || ||||| || |||||| ||||| | ||||| || || ||| Sbjct 1785222 ACATCAGAAAGAATCACGGTAAGGAAGAAATCAGAGCTAGAGATTTGTTCCCAGCTTTGT 1785163 Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTC 110925 ||||| ||||||| |||||||| | || || | ||||| ||| ||||| | | || Sbjct 1785162 GGATTCCAGATTTGTTCATGAAGAGAGTGGAACAGAATGGTGAATGGACTCTTTTCTCTC 1785103 Query 110926 CTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAA 110985 | | |||| || | | || || || || | || || ||||| | |||||| Sbjct 1785102 CAAACGAAGCTCCAGGCTTGCCAGAAGTTTACGGTGACGAATTCGAAGAGTTATACGAAC 1785043 Query 110986 AATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAA 111044 || || | |||||| ||| || || || | |||||| | | |||| | Sbjct 1785042 GTTACGAGAGAGAAGG-AAGAGGTAGAAGCACCGTCAAGGCTCAAAAGTTGTGGTACGCC 1784984 Query 111045 ATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAAT 111104 ||| | || | || |||||| || ||||||| || ||||| || ||| ||| Sbjct 1784983 ATCTTGGAGGCTCAGACTGAAACCGGTACTCCTTTCATGTTGTACAAGGATGCCTGTAAC 1784924 Query 111105 CGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 || | || || | ||| || || | |||||||||| ||| ||||| |||| Sbjct 1784923 AAGAAGACCAACCAGAAGAACTTGGGTATAATTAAGTCTTCTAACTTGTGTTGTG 1784869 >seq10 Length=251175 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 || |||| || ||||| ||||| ||||| | ||||||||| |||| || ||| | Sbjct 218934 CACTTGATGGATGATGATCCTGTTCTTTTCAACCGTCAACCATCATTGCACAAGATGAGT 218993 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 ||||||||||| | |||||| || | || | || || |||||||| | || | Sbjct 218994 ATGATGGCTCACAGAGTCAAGGTTATGCCTTACTCTACTTTCAGATTAAATTTGTCTGTT 219053 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | | || ||||| || ||||| ||||| ||||||||||| ||||||| || ||||| Sbjct 219054 ACTTCTCCATATAACGCCGATTTCGATGGTGATGAAATGAACTTGCATGTGCCGCAATCT 219113 Query 305489 AAGGTTACAATGACTGAATTATCAGAAATATGTTCTGTA 305527 | || | | |||||||||| ||||| ||| | ||| Sbjct 219114 CCTGAAACCAGGGCTGAATTATCCGAAATCTGTGCCGTA 219152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812511085259