Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3 132 4e-26 seq7 125 6e-24 >seq3 Length=2118207 Score = 132 bits (146), Expect = 4e-26 Identities = 395/595 (66%), Gaps = 27/595 (5%) Strand=Plus/Minus Query 43710 TTCCAATTCAA-TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGG 43768 |||| | |||| || || || | |||||||||||||| || || | || || || ||| Sbjct 1741390 TTCCCAATCAAGTACCACGAAGTCTGGCAAATGTACAAGAAGGCCGAAGCCTCCTTCTGG 1741331 Query 43769 ACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACC---A 43825 || || |||||| |||| |||| ||| || || ||| || | | | |||| | Sbjct 1741330 ACCGCCGAAGAAATTGACTTGAGTAAGGA--TACCAC--TGACTGGAACCAAAAGTTGAA 1741275 Query 43826 CAAGAA--AAACAT--TTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGAT 43881 |||||| ||| || || || || | ||||| || || ||||| ||||| || Sbjct 1741274 CAAGAACGAAAGATACTTCATTTCCCGTATCTTGGCTTTCTTCGCTGCCTCTGACGGTAT 1741215 Query 43882 AGTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGAT 43940 ||||| || || ||||| || | | || || || ||| | |||||||| | Sbjct 1741214 TGTCAACGAGAACTTGGTCGAGAACTTCTCTGCC-GAGGTCCAAATTCCAGAAGCCAAGT 1741156 Query 43941 GTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGA 44000 |||| || || || |||||| || ||||| ||||| || || | ||| | | | | Sbjct 1741155 GTTTCTACGGTTTCCAAATTATGATGGAAAACATTCACTCCGAGACCTACTCTTTGTTAA 1741096 Query 44001 TAGATACGTACATCAAAGATGGGCACGA--GAAGCATCGATTGTTT--AATGCGATAGA- 44055 | || || ||| | || || | | | ||||| | ||| ||||| || || Sbjct 1741095 TTGACACTTACGTTAAGGA----CCCTAAGGAAGCTGACTTCCTTTTCAATGCTATTGAC 1741040 Query 44056 AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGA 44115 |||| | | ||| || | | | || || ||||||||| | | |||||| | | || Sbjct 1741039 AACATTCCATGC-ATCAGAAAGAAGGCTGACTGGGCCTTGAGATGGATCTCTGACGACGA 1740981 Query 44116 TTCTTTT---GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172 | || || ||| || | || || ||||| | || || || |||||||| || Sbjct 1740980 GGCCTTGTTCGGTGAAAGATTAGTTGCTTTTGCTGCCGTTGAGGGTATTTTCTTCAGTGG 1740921 Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232 || ||||| | || || ||||||||||| ||||||||||||| || ||||| || || Sbjct 1740920 TTCTTTTGCTTCTATCTTCTGGTTAAAGAAGAGAGGTTTGATGCCAGGTTTGACTTTCTC 1740861 Query 44233 AAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTA 44287 |||||||| || | | |||||||| |||||| || || || || |||||| Sbjct 1740860 CAATGAGTTGATCTGCAGAGATGAAGGTTTACATACTGACTTCGCCTGTTTGTTA 1740806 >seq7 Length=1366685 Score = 125 bits (138), Expect = 6e-24 Identities = 248/363 (68%), Gaps = 18/363 (5%) Strand=Plus/Minus Query 19430 CCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || || || ||||| ||||| |||| ||||||||| ||| || ||||||||| Sbjct 1092648 CCAAAGATCGTCAACGGTCCAGAAATGTTAAGTAAATATGTCGGTGCTTCAGAAGAAAAT 1092589 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGG-GCGCAAAAGTTC 19547 | || ||||| |||||||||| ||| | || | ||| | | | ||| Sbjct 1092588 ATCCGTAACTTGTTCAAGGACGCTGAAGCTGAATATAAGCAAAAAGGTGAGGA----TTC 1092533 Query 19548 ---TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG 19604 |||||| | || || | ||||| |||||| | | | ||||| ||||| ||||| Sbjct 1092532 GGATTTGCATGTCATCATTTTCGATGAGTTGGACTCTGTATTCAAGCAGAGAGGCTCTGG 1092473 Query 19605 TGTAA---ATGGA------GTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGA 19655 | | ||||| || ||||| |||||| || || | | || || | || Sbjct 1092472 TAAATCTGATGGAACCGGTGTTGGTGACAATGTTGTTAACCAGTTATTATCCAAGATGGA 1092413 Query 19656 CGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAAT 19715 |||||| ||||| |||| ||||| ||||||||||| ||||| || ||| |||| || || Sbjct 1092412 TGGTGTTGACCAATTGAACAATATCTTAGTTATTGGTATGACCAACAGATTGGATTTGAT 1092353 Query 19716 AGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGA 19775 || | || || || |||| ||| | || ||||| |||| |||||| || || || Sbjct 1092352 CGATACAGCTTTGTTGAGACCAGGTAGATTTGAAATCCAGATTGAAATTTCATTGCCAGA 1092293 Query 19776 TGA 19778 ||| Sbjct 1092292 TGA 1092290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455907964095