Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03-
01] 19 sequences; 16,592,489 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq3 156 5e-33
seq5 82.4 8e-11
>seq3
Length=2118207
Score = 156 bits (172), Expect = 5e-33
Identities = 497/756 (66%), Gaps = 20/756 (3%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||| | || || | ||||| |||||||||||| | | ||| || | |||
Sbjct 1785648 TCATGAGAGTTTCCATTGGTATTCACGGTGACGACATCGAGAAGGTCATCGAATCTTACA 1785589
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|||| ||| ||| | ||| || |||| | || || ||||||||||||||||
Sbjct 1785588 ACTTGATGTCTCAACGTTTCTTCACCCACGGTTCTCCTACTTTGTTCAACGCTGGTACCC 1785529
Query 53313 -ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371
||| || || ||||| || ||||| || || |||||||| ||||| || || ||
Sbjct 1785528 CATCTCCA-CAAATGTCTTCTTGTTTCCTTGTCGCAATGAAGGACGACTCTATTGATGGT 1785470
Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431
|| ||||| || | ||| |||||| || |||||| | | |||||||| ||| |
Sbjct 1785469 ATTTACGACACCTTGAAGACCTGTGCCTTGATTTCCAAGAGTGCTGGTGGTATTGGTTTG 1785410
Query 53432 CAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
||| | | | ||| ||||| | | || | || || || ||||| | || |
Sbjct 1785409 CACATTCAC-AACATCCGTTCTACTGGTGCTTACATTGCTGGTACTAACGGTACCTCCAA 1785351
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| || | || ||| | || |||||||||||||| || | ||||| |||| |||||
Sbjct 1785350 CGGTATTATTCCAATGGTTCGTGTCTTCAACAACACTGCTAGATACGTTGACCAAGGTGG 1785291
Query 53551 TGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609
| ||||| | ||| | | || ||| | ||| | ||||| |||||||| ||||| | |
Sbjct 1785290 TAACAAGCGTCCAGGTG-CTTTTGCCTTGTACTTGGAGCCATGGCACGCAGACATCTTCG 1785232
Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCCGTGACCTGTT 53667
| || | || | | |||||| ||| | ||||| || | ||| | || ||||
Sbjct 1785231 ACTTCATTGACATCAGAAAGAATCACGGTAAGGAAGAAATCAGAGCT--AGAGATTTGTT 1785174
Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727
||||| |||||||||| || | |||||| | | ||||| || | | || |||
Sbjct 1785173 CCCAGCTTTGTGGATTCCAGATTTGTTCATGAAGAGAGTGGAACAGAATGGTGAATGGAC 1785114
Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787
|| | | || ||||| || ||| | | | || |||||||| || || | ||
Sbjct 1785113 TCTTTTCTCTCCAAACGAAGCTCCAGGCTTGCCAGAAGTTTACGGTGACGAATTCGAAGA 1785054
Query 53788 GATGTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAAGAAG----GTCAAGGCGCGT 53842
| | || || ||| |||| || || | | | | | ||||| |||||||| |
Sbjct 1785053 GTTATA-CGAACGTTACG-AG---AGAGAAGGAAGAGGTAGAAGCACCGTCAAGGCTCAA 1784999
Query 53843 GAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTAC 53902
|| | ||| | || ||| | || ||| || || || || || | ||||| |||
Sbjct 1784998 AAGTTGTGGTACGCCATCTTGGAGGCTCAGACTGAAACCGGTACTCCTTTCATGTTGTAC 1784939
Query 53903 AAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
|||||| | ||| |||||| |||||||||||||
Sbjct 1784938 AAGGATGCCTGTAACAAGAAGACCAACCAGAAGAAC 1784903
Score = 96.9 bits (106), Expect = 4e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786
||||||| | ||| ||| || ||||| || |||| ||| | | ||||| ||| |
Sbjct 1784125 CTCAAGGCCTTATACAAGACTGTTTGGGAAATCTCACAAAAGCATATCATTGATATGGCT 1784066
Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846
||||| | | ||| | ||| || || || ||||| ||||||| ||| || | ||
Sbjct 1784065 GCTGACAGAGCTGCCTTCATTGATCAATCACAGTCGTTGAACATTCACATCAAGGACCCA 1784006
Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906
|| ||| ||| | | ||| ||||| || ||||| ||||||||||| | ||||| |||
Sbjct 1784005 ACAATGGGTAAGCTTACCTCTATGCATTTCTACGGTTGGAAGAAGGGTTTGAAGACTGGT 1783946
Query 55907 ATGTACTA 55914
||||||||
Sbjct 1783945 ATGTACTA 1783938
Score = 93.3 bits (102), Expect = 5e-14
Identities = 272/412 (66%), Gaps = 9/412 (2%)
Strand=Plus/Plus
Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828
||||||||||||| ||||| ||||| || || | | || ||||| | || | ||||
Sbjct 1740834 CCTTCATCTCTGCAGATCAACTCATTGGAGAAAGTCAAACCTGGCATCAAACCTCTCTTC 1740893
Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888
|| ||||| ||||| | | || |||||||||||||| || || || || |||||
Sbjct 1740894 TTTAACCAGAAGATAGAAGCAAAAGAACCACTGAAGAAAATACCCTCAACGGCAGCAAAA 1740953
Query 74889 GCGACAAGGCGTTGCGCGAAC---GGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCA 74945
|| || | | || ||||| | | ||| || ||||| || ||||| |||
Sbjct 1740954 GCAACTAATCTTTCACCGAACAAGGCCTCGTCGTCAGAGATCCATCTCAAGGCCCAGTCA 1741013
Query 74946 GCTTTTCGTTTGACCGCAGGGACAG-TATCGATCGCTTGGAAGAGG--CTTGCCTTCTCT 75002
|| || | ||| ||| ||| | | || || || | ||| ||| | |||| ||
Sbjct 1741014 GCCTTCTTTCTGA-TGCATGGAATGTTGTCAATAGCATTGAAAAGGAAGTCAGCTTC-CT 1741071
Query 75003 TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCG 75062
| ||| ||||| ||| ||||||| | | ||||| ||||| || ||||| ||
Sbjct 1741072 TAGGG-TCCTTAACGTAAGTGTCAATTAACAAAGAGTAGGTCTCGGAGTGAATGTTTTCC 1741130
Query 75063 TTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAA 75122
| | ||| | |||||||| || || |||| ||| || || || || ||
Sbjct 1741131 ATCATAATTTGGAAACCGTAGAAACACTTGGCTTCTGGAATTTGGACCTCGGCAGAGAAG 1741190
Query 75123 TTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCA 75174
||| | | | ||||| |||| || ||||| ||||| ||||| |||||||
Sbjct 1741191 TTCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCCA 1741242
>seq5
Length=1730773
Score = 82.4 bits (90), Expect = 8e-11
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302
||||||||||| |||||| | |||||||||| || || | || ||| ||| |||
Sbjct 1417525 GAGACGTACGAATTAATGTCTAATAAGTACTTTATCCATGCATCTCCTACCTTGTACAAT 1417584
Query 53303 GCTGGTACG-AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361
||||| ||| ||| || | |||| ||||| || | || ||| ||||||||||
Sbjct 1417585 GCTGGAACGGAATATAACT-ACTTGTCATCATGCTTTTTGATAGCAATGGAGGATGACTC 1417643
Query 53362 GATCGACGGCATCTACGAGACGCT 53385
||||||||||||||| | |||||
Sbjct 1417644 CATCGACGGCATCTACAAAACGCT 1417667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215870036200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |