Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 156 5e-33 seq5 82.4 8e-11 >seq3 Length=2118207 Score = 156 bits (172), Expect = 5e-33 Identities = 497/756 (66%), Gaps = 20/756 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||| | || || | ||||| |||||||||||| | | ||| || | ||| Sbjct 1785648 TCATGAGAGTTTCCATTGGTATTCACGGTGACGACATCGAGAAGGTCATCGAATCTTACA 1785589 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||| ||| ||| | ||| || |||| | || || |||||||||||||||| Sbjct 1785588 ACTTGATGTCTCAACGTTTCTTCACCCACGGTTCTCCTACTTTGTTCAACGCTGGTACCC 1785529 Query 53313 -ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 ||| || || ||||| || ||||| || || |||||||| ||||| || || || Sbjct 1785528 CATCTCCA-CAAATGTCTTCTTGTTTCCTTGTCGCAATGAAGGACGACTCTATTGATGGT 1785470 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || ||||| || | ||| |||||| || |||||| | | |||||||| ||| | Sbjct 1785469 ATTTACGACACCTTGAAGACCTGTGCCTTGATTTCCAAGAGTGCTGGTGGTATTGGTTTG 1785410 Query 53432 CAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 ||| | | | ||| ||||| | | || | || || || ||||| | || | Sbjct 1785409 CACATTCAC-AACATCCGTTCTACTGGTGCTTACATTGCTGGTACTAACGGTACCTCCAA 1785351 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || || | || ||| | || |||||||||||||| || | ||||| |||| ||||| Sbjct 1785350 CGGTATTATTCCAATGGTTCGTGTCTTCAACAACACTGCTAGATACGTTGACCAAGGTGG 1785291 Query 53551 TGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | ||||| | ||| | | || ||| | ||| | ||||| |||||||| ||||| | | Sbjct 1785290 TAACAAGCGTCCAGGTG-CTTTTGCCTTGTACTTGGAGCCATGGCACGCAGACATCTTCG 1785232 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCCGTGACCTGTT 53667 | || | || | | |||||| ||| | ||||| || | ||| | || |||| Sbjct 1785231 ACTTCATTGACATCAGAAAGAATCACGGTAAGGAAGAAATCAGAGCT--AGAGATTTGTT 1785174 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||||| |||||||||| || | |||||| | | ||||| || | | || ||| Sbjct 1785173 CCCAGCTTTGTGGATTCCAGATTTGTTCATGAAGAGAGTGGAACAGAATGGTGAATGGAC 1785114 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787 || | | || ||||| || ||| | | | || |||||||| || || | || Sbjct 1785113 TCTTTTCTCTCCAAACGAAGCTCCAGGCTTGCCAGAAGTTTACGGTGACGAATTCGAAGA 1785054 Query 53788 GATGTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAAGAAG----GTCAAGGCGCGT 53842 | | || || ||| |||| || || | | | | | ||||| |||||||| | Sbjct 1785053 GTTATA-CGAACGTTACG-AG---AGAGAAGGAAGAGGTAGAAGCACCGTCAAGGCTCAA 1784999 Query 53843 GAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTAC 53902 || | ||| | || ||| | || ||| || || || || || | ||||| ||| Sbjct 1784998 AAGTTGTGGTACGCCATCTTGGAGGCTCAGACTGAAACCGGTACTCCTTTCATGTTGTAC 1784939 Query 53903 AAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||||| | ||| |||||| ||||||||||||| Sbjct 1784938 AAGGATGCCTGTAACAAGAAGACCAACCAGAAGAAC 1784903 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 ||||||| | ||| ||| || ||||| || |||| ||| | | ||||| ||| | Sbjct 1784125 CTCAAGGCCTTATACAAGACTGTTTGGGAAATCTCACAAAAGCATATCATTGATATGGCT 1784066 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 ||||| | | ||| | ||| || || || ||||| ||||||| ||| || | || Sbjct 1784065 GCTGACAGAGCTGCCTTCATTGATCAATCACAGTCGTTGAACATTCACATCAAGGACCCA 1784006 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 || ||| ||| | | ||| ||||| || ||||| ||||||||||| | ||||| ||| Sbjct 1784005 ACAATGGGTAAGCTTACCTCTATGCATTTCTACGGTTGGAAGAAGGGTTTGAAGACTGGT 1783946 Query 55907 ATGTACTA 55914 |||||||| Sbjct 1783945 ATGTACTA 1783938 Score = 93.3 bits (102), Expect = 5e-14 Identities = 272/412 (66%), Gaps = 9/412 (2%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 ||||||||||||| ||||| ||||| || || | | || ||||| | || | |||| Sbjct 1740834 CCTTCATCTCTGCAGATCAACTCATTGGAGAAAGTCAAACCTGGCATCAAACCTCTCTTC 1740893 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || ||||| ||||| | | || |||||||||||||| || || || || ||||| Sbjct 1740894 TTTAACCAGAAGATAGAAGCAAAAGAACCACTGAAGAAAATACCCTCAACGGCAGCAAAA 1740953 Query 74889 GCGACAAGGCGTTGCGCGAAC---GGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCA 74945 || || | | || ||||| | | ||| || ||||| || ||||| ||| Sbjct 1740954 GCAACTAATCTTTCACCGAACAAGGCCTCGTCGTCAGAGATCCATCTCAAGGCCCAGTCA 1741013 Query 74946 GCTTTTCGTTTGACCGCAGGGACAG-TATCGATCGCTTGGAAGAGG--CTTGCCTTCTCT 75002 || || | ||| ||| ||| | | || || || | ||| ||| | |||| || Sbjct 1741014 GCCTTCTTTCTGA-TGCATGGAATGTTGTCAATAGCATTGAAAAGGAAGTCAGCTTC-CT 1741071 Query 75003 TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCG 75062 | ||| ||||| ||| ||||||| | | ||||| ||||| || ||||| || Sbjct 1741072 TAGGG-TCCTTAACGTAAGTGTCAATTAACAAAGAGTAGGTCTCGGAGTGAATGTTTTCC 1741130 Query 75063 TTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAA 75122 | | ||| | |||||||| || || |||| ||| || || || || || Sbjct 1741131 ATCATAATTTGGAAACCGTAGAAACACTTGGCTTCTGGAATTTGGACCTCGGCAGAGAAG 1741190 Query 75123 TTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCA 75174 ||| | | | ||||| |||| || ||||| ||||| ||||| ||||||| Sbjct 1741191 TTCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCCA 1741242 >seq5 Length=1730773 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| |||||| | |||||||||| || || | || ||| ||| ||| Sbjct 1417525 GAGACGTACGAATTAATGTCTAATAAGTACTTTATCCATGCATCTCCTACCTTGTACAAT 1417584 Query 53303 GCTGGTACG-AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||||| ||| ||| || | |||| ||||| || | || ||| |||||||||| Sbjct 1417585 GCTGGAACGGAATATAACT-ACTTGTCATCATGCTTTTTGATAGCAATGGAGGATGACTC 1417643 Query 53362 GATCGACGGCATCTACGAGACGCT 53385 ||||||||||||||| | ||||| Sbjct 1417644 CATCGACGGCATCTACAAAACGCT 1417667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215870036200