Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9 163 3e-35 seq3 131 2e-25 >seq9 Length=507287 Score = 163 bits (180), Expect = 3e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27399 TACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA 27458 || || |||||||||||| || ||||| | ||||| ||||| ||||| | || ||||| Sbjct 283039 TAATACAATGCAAATCTTCGTTAAGACATTAACCGGTAAGACCATTACCTTGGAAGTTGA 282980 Query 27459 GTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518 ||| |||| ||||| || | ||| | || || || |||||||| || |||||||| Sbjct 282979 GTCTTCCGATACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCC 282920 Query 27519 AGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGA 27578 |||||| |||||| |||| || |||||||||||| | || || | | | || || | || Sbjct 282919 AGACCAACAGCGTTTAATCTTCGCTGGTAAGCAATTGGAAGACGGTAGAACTCTTTCTGA 282860 Query 27579 CTATAATGTCCAAAAGGAATCCACTCTTCA 27608 ||| || |||||||||||||||||||||| Sbjct 282859 CTACAACATCCAAAAGGAATCCACTCTTCA 282830 Score = 152 bits (168), Expect = 6e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || ||||| ||||||||||||||||| || | Sbjct 282120 ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACCATTACTCTTGAGGTTGAATCTTCT 282061 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| | || || || |||||||| || |||||||||||||| Sbjct 282060 GACACCATTGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 282001 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||| || ||||||||| | || || | | | || || | ||||| || Sbjct 282000 CAAAGATTGATTTTCGCCGGTAAGCAATTAGAAGACGGTAGAACTCTTTCTGACTACAAC 281941 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 |||||||||||||||||||||| |||| || Sbjct 281940 ATCCAAAAGGAATCCACTCTTCACTTAGTTTT 281909 Score = 150 bits (166), Expect = 2e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || |||||||| |||||||| || ||||| | Sbjct 282804 ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACTATCACTCTTGAAGTCGAGTCGTCT 282745 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| | || || || |||||||| || |||||||||||||| Sbjct 282744 GACACCATTGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 282685 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||| || ||||||||| | || || | | | || || | ||||| || Sbjct 282684 CAAAGATTGATTTTCGCCGGTAAGCAATTAGAAGACGGTAGAACTCTTTCTGACTACAAC 282625 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||||||||||||||||||||| |||| ||| Sbjct 282624 ATCCAAAAGGAATCCACTCTTCACTTAGTTTTG 282592 Score = 149 bits (164), Expect = 7e-31 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || ||||| ||||| | || ||||| || Sbjct 282576 ATGCAAATCTTCGTYAAGACWTTRACYGGTAAGACCATTACYYTKGARGTTGARTCTTCY 282517 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || || || |||||||| || ||||||||||| || Sbjct 282516 GAYACYATTGACAACGTYAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGAYCAA 282457 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || || || ||||||||| | || || | | | || || | ||||| || Sbjct 282456 CARMGWTTRATYTTCGCYGGTAAGCAATTRGAAGACGGTAGAACTCTTTCTGACTACAAC 282397 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||||||||||||||||||||| |||| ||| Sbjct 282396 ATCCAAAAGGAATCCACTCTTCACTTAGTTTTG 282364 Score = 147 bits (162), Expect = 2e-30 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || ||||| ||||||||||| ||||| || | Sbjct 282348 ATGCAAATCTTCGTYAAGACTTTGACTGGTAAGACCATTACTCTTGARGTTGAATCTTCT 282289 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || || || |||||||| || ||||||||||| || Sbjct 282288 GACACYATTGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGAYCAA 282229 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||| || ||||||||| | || || | | | || || | ||||| || Sbjct 282228 CAAAGATTGATTTTCGCCGGTAAGCAATTAGAAGACGGTAGAACTCTTTCTGACTACAAC 282169 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 |||||||||||||||||||||| |||| || Sbjct 282168 ATCCAAAAGGAATCCACTCTTCACTTAGTTTT 282137 >seq3 Length=2118207 Score = 131 bits (144), Expect = 2e-25 Identities = 270/400 (68%), Gaps = 14/400 (4%) Strand=Plus/Plus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| ||| |||| || || || || | ||| || || | | | |||||| || Sbjct 1784612 CATGAAAGTGTCGGCCAAACCTTGTACACCCAAGGCAATTGGTCTATTTCTCTTGTTAGA 1784671 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 || |||||| || |||| |||||| |||| | ||||||| ||||| ||| || || Sbjct 1784672 TCTCTCGGCTTCTGGAACTGGGTAGTAGTTTCTGTCGATGATCTTGTTCAAGTTACGGGT 1784731 Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT---------TGGTTCCCCTT 80885 |||| | || || ||||| | |||| ||||| | | | || |||| Sbjct 1784732 AACAGACTTGGTGACGTCATGCAACTTCTCAAAGTTGTACCACAAAGACTTGTCATCCTT 1784791 Query 80886 CACA---AATGCCGG-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCAT 80941 | || || | || || || | || |||| ||| || || || || || || | | Sbjct 1784792 CTCAGCAAAAGATGGCAAAGCG-ATAGAGGCCAAATTACAGACAGCAACTTCCTCTGGAG 1784850 Query 80942 CTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCT 81001 | |||||||||| || ||||| ||||||||||||||| |||||| ||| |||| Sbjct 1784851 AGGAGTACTCGACGATCTCACAACACAAGTTAGAAGACTTAATTATACCCAAGTTCTTCT 1784910 Query 81002 GGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCT 81061 |||| | ||| ||| || || |||||||| ||||| | || |||||||| || || Sbjct 1784911 GGTTGGTCTTCTTGTTACAGGCATCCTTGTACAACATGAAAGGAGTACCGGTTTCAGTCT 1784970 Query 81062 GTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGAC 81101 | | || | |||||||| ||| | || | |||||||| Sbjct 1784971 GAGCCTCCAAGATGGCGTACCACAACTTTTGAGCCTTGAC 1785010 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || |||||||| | || || ||||| ||||| | || || ||||| Sbjct 53215 AATGCAAATTTTCGTCAAGACTTTAACAGGTAAGACCATTACCTTGGAAGTCGAGTCCTC 53274 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | ||| | || || ||||||||||| || ||||| || ||||| Sbjct 53275 CGACACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGTATTCCACCTGACCA 53334 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | | || || ||||||||||| | || || | | | ||||| | ||||| || Sbjct 53335 ACAAAGATTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACCCTTTCTGACTACAA 53394 Query 27585 TGTCCAAAAGGAATCCAC 27602 |||| ||||| ||||| Sbjct 53395 CATCCAGAAGGAGTCCAC 53412 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 80047 TAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTC 80106 |||||||| || ||||| | ||||||||||| ||||| | |||||||| | ||||| Sbjct 1783938 TAGTACATACCAGTCTTCAAACCCTTCTTCCAACCGTAGAAATGCATAGAGGTAAGCTTA 1783997 Query 80107 GCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCA 80166 | | ||| |||| || ||| ||||||| ||||| || ||| ||||| || | Sbjct 1783998 CCCATTGTTGGGTCCTTGATGTGAATGTTCAACGACTGTGATTGATCAATGAAGGCAGCT 1784057 Query 80167 CGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGATACA-- 80224 | || || ||||| ||||| || |||||||| |||||||| || || || | Sbjct 1784058 CTGTCAGCAGCCATATCAATGATATGCTTTTGTGAGATTTCCCAAACAGTCTTGTATAAG 1784117 Query 80225 -CCTTACGAAGCTCCTCTGGAATGT 80248 |||| ||||| |||||||||| Sbjct 1784118 GCCTT---GAGCTCATCTGGAATGT 1784139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310264551280