Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq9 165 2e-35 seq3 156 1e-32 >seq9 Length=507287 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | |||||||||||| || ||||||||||| || || | ||| || || || Sbjct 281905 TCTTAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACC 281964 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | ||||| || ||||| || | | ||||||||| ||||||| |||||||| Sbjct 281965 GTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTT 282024 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || ||||| || ||||||||||| ||||||||| ||||| || Sbjct 282025 GTCTTGGATCTTGGACTTAACGTTGTCAATGGTGTCAGAAGATTCAACCTCAAGAGTAAT 282084 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| || || | ||||| Sbjct 282085 GGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 282120 Score = 154 bits (170), Expect = 3e-32 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | || | |||||||||||| || ||||||||||| || || | ||| || || || Sbjct 282133 TCTYAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACC 282192 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | ||||| || ||||| || | | |||||| || ||||||| |||||||| Sbjct 282193 GTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGRTCTGGAGGAATACCTTCCTT 282252 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || ||||| || || |||||||| |||||| || ||||| || Sbjct 282253 GTCTTGGATCTTGGACTTAACGTTGTCAATRGTGTCAGAAGATTCAACYTCAAGAGTAAT 282312 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| || || | ||||| Sbjct 282313 GGTCTTACCAGTCAAAGTCTTRACGAAGATTTGCAT 282348 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||||||||| || ||||||||||| || || | ||| || || || ||||| | || Sbjct 282601 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTG 282660 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||| || | | ||||||||| ||||||| ||||||||||| |||||||| Sbjct 282661 CTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTT 282720 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || ||||||||||| || || || |||||||| ||||| || || Sbjct 282721 GGACTTAACGTTGTCAATGGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTACCAGT 282780 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | |||||| || || | ||||| Sbjct 282781 CAAAGTCTTAACGAAGATTTGCAT 282804 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | |||||||||||| || ||||||||||| || || | ||| || || || Sbjct 282817 TCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACC 282876 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| || |||||||| | || |||||||| ||||||| |||||||| Sbjct 282877 GTCTTCCAATTGCTTACCAGCGAAGATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTT 282936 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || ||||| || ||||| || || ||||| || | || || Sbjct 282937 GTCTTGGATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCAACTTCCAAGGTAAT 282996 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTAT 211119 ||||| || || | ||||| || || | |||||| ||| Sbjct 282997 GGTCTTACCGGTTAATGTCTTAACGAAGATTTGCATTGTAT 283037 Score = 140 bits (154), Expect = 8e-28 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||||||||| || ||||||||||| || || | ||| || || || ||||| | || Sbjct 282373 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCYAATTG 282432 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||| || | | ||||| || ||||||| ||||||||||| |||||||| Sbjct 282433 CTTACCRGCGAARATYAAWCKYTGTTGRTCTGGAGGAATACCTTCCTTGTCTTGGATCTT 282492 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || || || || || ||||| || | || || ||||| || || Sbjct 282493 GGACTTRACGTTGTCAATRGTRTCRGAAGAYTCAACYTCMARRGTAATGGTCTTACCRGT 282552 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | ||||| Sbjct 282553 YAAWGTCTTRACGAAGATTTGCAT 282576 >seq3 Length=2118207 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||| | |||||||| || |||||||| || || | |||||| || || Sbjct 53431 TCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTACC 53372 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| |||||| || |||||||| | | |||||||||||| |||| |||||||| Sbjct 53371 GTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 53312 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||||||||| || || || || |||||||| ||| || || || | || || Sbjct 53311 GTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 53252 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | |||||| || || | |||||||| Sbjct 53251 GGTCTTACCTGTTAAAGTCTTGACGAAAATTTGCATTTT 53213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151717818935