Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq9 111 1e-19 >seq9 Length=507287 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 || |||||| || |||||||| || | || || || || || || | |||||||| || Sbjct 283036 TACAATGCAAATCTTCGTTAAGACATTAACCGGTAAGACCATTACCTTGGAAGTTGAGTC 282977 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| | | || || || ||||| |||||| | || ||||| Sbjct 282976 TTCCGATACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCTCCAGA 282917 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||||||||||| || || || || ||| ||||||||| | ||| | || || Sbjct 282916 CCAACAGCGTTTAATCTTCGCTGGTAAGCAATTGGAAGACGGTAGAACTCTTTCTGACTA 282857 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| ||||| || ||||| | || || |||||||| ||| |||| || Sbjct 282856 CAACATCCAAAAGGAATCCACTCTTCACTTGGTTTTAAGATTGAGAGGTGG 282806 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| || | || || || || || ||||| || ||||| || | Sbjct 282120 ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACCATTACTCTTGAGGTTGAATCTTCT 282061 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || | | ||||| |||||| | || ||||| || Sbjct 282060 GACACCATTGACAACGTTAAGTCCAAGA-TCCAAGACAAGGAAGGTATTCCTCCAGACCA 282002 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||| || ||| | ||||||| | ||| | || ||||| Sbjct 282001 ACAAAGATTGATTTTCGCCGGTAAGCAATTAGAAGACGGTAGAACTCTTTCTGACTACAA 281942 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || ||||| | || ||||||||||| ||| |||| || Sbjct 281941 CATCCAAAAGGAATCCACTCTTCACTTAGTTTTAAGATTGAGAGGTGG 281894 Score = 107 bits (118), Expect = 1e-18 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | || || || || || ||||| || ||||| || | Sbjct 282348 ATGCAAATCTTCGTYAAGACTTTGACTGGTAAGACCATTACTCTTGARGTTGAATCTTCT 282289 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || | | ||||| |||||| | || ||||| || Sbjct 282288 GACACYATTGACAACGTTAAGTCCAAGA-TCCAAGACAAGGAAGGTATTCCTCCAGAYCA 282230 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||| || ||| | ||||||| | ||| | || ||||| Sbjct 282229 ACAAAGATTGATTTTCGCCGGTAAGCAATTAGAAGACGGTAGAACTCTTTCTGACTACAA 282170 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || ||||| | || |||||||| || ||| |||| || Sbjct 282169 CATCCAAAAGGAATCCACTCTTCACTTAGTTTTRAGATTGAGAGGTGG 282122 Score = 100 bits (110), Expect = 2e-16 Identities = 155/228 (68%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | || || || || || || | || ||||| || | Sbjct 282576 ATGCAAATCTTCGTYAAGACWTTRACYGGTAAGACCATTACYYTKGARGTTGARTCTTCY 282517 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| || | || | || | | ||||| |||||| | || ||||| || Sbjct 282516 GAYACYATTGACAACGTYAAGTCCAAGA-TCCAAGACAAGGAAGGTATTCCTCCAGAYCA 282458 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || ||| | ||||||| | ||| | || ||||| Sbjct 282457 ACARMGWTTRATYTTCGCYGGTAAGCAATTRGAAGACGGTAGAACTCTTTCTGACTACAA 282398 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || ||||| | || |||||||| || ||| |||| || Sbjct 282397 CATCCAAAAGGAATCCACTCTTCACTTAGTTTTGAGATTGAGAGGTGG 282350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009521729652