Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9 159 8e-34 seq3 152 1e-31 >seq9 Length=507287 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| ||||||||||| ||||||| ||||| || | | |||||| || Sbjct 282589 TCTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACC 282648 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| ||||| || ||||| || | || ||||||||| || |||||||||||||| Sbjct 282649 GTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTT 282708 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| || || |||||||| || | || || || | ||||| Sbjct 282709 GTCTTGGATCTTGGACTTAACGTTGTCAATGGTGTCAGACGACTCGACTTCAAGAGTGAT 282768 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | ||| | |||||| Sbjct 282769 AGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 282804 Score = 156 bits (172), Expect = 1e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||||||||| ||||||| ||||| || | | |||||| || ||||||| || Sbjct 281917 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTG 281976 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || ||||| || | || ||||||||| || |||||||||||||||||||||||||| Sbjct 281977 CTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTT 282036 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || || |||||||| || | ||| || || | || || ||||| || || Sbjct 282037 GGACTTAACGTTGTCAATGGTGTCAGAAGATTCAACCTCAAGAGTAATGGTCTTACCAGT 282096 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | ||| | |||||| Sbjct 282097 CAAAGTCTTAACGAAGATTTGCAT 282120 Score = 152 bits (168), Expect = 1e-31 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | || | ||| ||||||||||| ||||||| ||||| || | | |||||| || Sbjct 282133 TCTYAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACC 282192 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| ||||| || ||||| || | || |||||| || || |||||||||||||| Sbjct 282193 GTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGRTCTGGAGGAATACCTTCCTT 282252 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| || || || ||||| || | ||| || || | || || Sbjct 282253 GTCTTGGATCTTGGACTTAACGTTGTCAATRGTGTCAGAAGATTCAACYTCAAGAGTAAT 282312 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | ||| | |||||| Sbjct 282313 GGTCTTACCAGTCAAAGTCTTRACGAAGATTTGCAT 282348 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||||||||| ||||||| ||||| || | | |||||| || ||||| | || Sbjct 282829 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTG 282888 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||||||||| | || |||||||| || |||||||||||||||||||||||||| Sbjct 282889 CTTACCAGCGAAGATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTT 282948 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || || ||||| || || | || || || || || || ||||| || || Sbjct 282949 GGACTTGACGTTGTCAATGGTATCGGAAGACTCAACTTCCAAGGTAATGGTCTTACCGGT 283008 Query 225690 CAAAGTTTTTATGAACACTTGCATTTTAT 225718 || || || | ||| | ||||||| ||| Sbjct 283009 TAATGTCTTAACGAAGATTTGCATTGTAT 283037 Score = 143 bits (158), Expect = 6e-29 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| ||||||||||| ||||||| ||||| || | | |||||| || Sbjct 282361 TCTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACC 282420 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| || ||||| || | | ||||| || || |||||||||||||| Sbjct 282421 GTCTTCYAATTGCTTACCRGCGAARATYAAWCKYTGTTGRTCTGGAGGAATACCTTCCTT 282480 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| || || || || || || | || || || | || || Sbjct 282481 GTCTTGGATCTTGGACTTRACGTTGTCAATRGTRTCRGAAGAYTCAACYTCMARRGTAAT 282540 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || || | ||| | |||||| Sbjct 282541 GGTCTTACCRGTYAAWGTCTTRACGAAGATTTGCAT 282576 >seq3 Length=2118207 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | ||| | ||||| || || |||| ||||| || | | ||||| || Sbjct 53431 TCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTACC 53372 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | |||||| ||||||||||| | || ||||||||| || |||||||||||||| Sbjct 53371 GTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 53312 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| ||| ||| || |||||||| |||| || || || || || || Sbjct 53311 GTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 53252 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || ||||| || | ||| | ||||||||| Sbjct 53251 GGTCTTACCTGTTAAAGTCTTGACGAAAATTTGCATTTT 53213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530909693186