Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq9 114 3e-20 seq3 86.0 1e-11 >seq9 Length=507287 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| || || |||||||||||||| || | | |||||| || ||||||| Sbjct 282602 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGC 282661 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||| || | || || ||||| | | || |||||||| ||||| || || Sbjct 282662 TTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTG 282721 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || | || | | |||| || ||| ||||||||||| ||||| || || || Sbjct 282722 GACTTAACGTTGTCAATGGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTACCAGTC 282781 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | |||||| ||||||| ||||| Sbjct 282782 AAAGTCTTAACGAAGATTTGCAT 282804 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| || || |||||||||||||| || | | |||||| || ||||||| Sbjct 281918 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGC 281977 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||| || | || || ||||| | | || |||||||| ||||| || || Sbjct 281978 TTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTG 282037 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || | || | | |||| ||| || || ||||||||||| || || || || Sbjct 282038 GACTTAACGTTGTCAATGGTGTCAGAAGATTCAACCTCAAGAGTAATGGTCTTACCAGTC 282097 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | |||||| ||||||| ||||| Sbjct 282098 AAAGTCTTAACGAAGATTTGCAT 282120 Score = 105 bits (116), Expect = 2e-17 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| || || |||||||||||||| || | | |||||| || ||||||| Sbjct 282146 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGC 282205 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||| || | || || || || | | || |||||||| ||||| || || Sbjct 282206 TTACCGGCGAAAATCAATCTTTGTTGRTCTGGAGGAATACCTTCCTTGTCTTGGATCTTG 282265 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || | || | |||| ||| || || ||||||||||| || || || || Sbjct 282266 GACTTAACGTTGTCAATRGTGTCAGAAGATTCAACYTCAAGAGTAATGGTCTTACCAGTC 282325 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | |||||| ||||||| ||||| Sbjct 282326 AAAGTCTTRACGAAGATTTGCAT 282348 Score = 100 bits (110), Expect = 7e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| || || |||||||||||||| || | | |||||| || ||||| | Sbjct 282826 CAAG-TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCA 282884 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || |||||||| | | ||| ||||| | | || |||||||| ||||| | Sbjct 282885 ATTGCTTACCAGCGAAGATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGA 282944 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | | | || ||| ||| ||||| | ||||| || || | Sbjct 282945 TCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCAACTTCCAAGGTAATGGTCTTAC 283004 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 | || | ||||| ||||||| |||||| || Sbjct 283005 CGGTTAATGTCTTAACGAAGATTTGCATTGTA 283036 Score = 91.5 bits (100), Expect = 3e-13 Identities = 136/203 (67%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| || || |||||||||||||| || | | |||||| || ||||| | Sbjct 282374 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCYAATTGC 282433 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || ||||| || | | || || || | | || |||||||| ||||| || || Sbjct 282434 TTACCRGCGAARATYAAWCKYTGTTGRTCTGGAGGAATACCTTCCTTGTCTTGGATCTTG 282493 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || | || | | || ||| || || || | ||||| || || || || Sbjct 282494 GACTTRACGTTGTCAATRGTRTCRGAAGAYTCAACYTCMARRGTAATGGTCTTACCRGTY 282553 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||||| ||||| Sbjct 282554 AAWGTCTTRACGAAGATTTGCAT 282576 >seq3 Length=2118207 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| || ||||||||||| || | | ||||| || ||||| | || || Sbjct 53412 GTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTACCGTCTTCCAACTGCTTACCA 53353 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| | || || ||||| | | || |||||||| || || || || ||| Sbjct 53352 GCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGGATCTTGGACTTG 53293 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | |||| || ||| ||||| | ||||| || || || || | |||| Sbjct 53292 ACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTACCTGTTAAAGTC 53233 Query 152088 TTCACGAAGACCTGCATTTT 152107 || ||||| | |||||||| Sbjct 53232 TTGACGAAAATTTGCATTTT 53213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820519116749