Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq9 179 8e-40 seq3 143 6e-29 >seq9 Length=507287 Score = 179 bits (198), Expect = 8e-40 Identities = 155/192 (81%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||||||||||| ||| || | || || |||| ||| || ||||| || Sbjct 282613 TTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAA 282672 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||||| | ||||||||| |||||||| ||||||||||||||||| | || ||| | Sbjct 282673 AATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTTAACGTT 282732 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | |||||||| |||||||| |||||||| |||||||||||||| Sbjct 282733 GTCAATGGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTACCAGTCAAAGTCTTAAC 282792 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 282793 GAAGATTTGCAT 282804 Score = 176 bits (194), Expect = 9e-39 Identities = 154/192 (80%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||||||||||| ||| || | || || |||| ||| || ||||| || Sbjct 281929 TTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAA 281988 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||||| | ||||||||| |||||||| ||||||||||||||||| | || ||| | Sbjct 281989 AATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTTAACGTT 282048 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| |||| ||| || || ||||| || |||||||| |||||||||||||| Sbjct 282049 GTCAATGGTGTCAGAAGATTCAACCTCAAGAGTAATGGTCTTACCAGTCAAAGTCTTAAC 282108 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 282109 GAAGATTTGCAT 282120 Score = 174 bits (192), Expect = 3e-38 Identities = 152/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||||||||||| ||| || | || || |||| ||| || ||||| || Sbjct 282157 TTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCTAATTGCTTACCGGCGAA 282216 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||||| | |||||| || |||||||| ||||||||||||||||| | || ||| | Sbjct 282217 AATCAATCTTTGTTGRTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTTAACGTT 282276 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| |||| ||| || || ||||| || |||||||| ||||||||||| || Sbjct 282277 GTCAATRGTGTCAGAAGATTCAACYTCAAGAGTAATGGTCTTACCAGTCAAAGTCTTRAC 282336 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 282337 GAAGATTTGCAT 282348 Score = 152 bits (168), Expect = 1e-31 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||||||||||| ||| || | || || || | ||| || || || || Sbjct 282385 TTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCYAATTGCTTACCRGCGAA 282444 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || || | ||||| || |||||||| ||||||||||||||||| | || ||| | Sbjct 282445 RATYAAWCKYTGTTGRTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTTRACGTT 282504 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || || || |||| || || || | || || |||||||| || || ||||| || Sbjct 282505 GTCAATRGTRTCRGAAGAYTCAACYTCMARRGTAATGGTCTTACCRGTYAAWGTCTTRAC 282564 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 282565 GAAGATTTGCAT 282576 Score = 150 bits (166), Expect = 4e-31 Identities = 149/193 (77%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||||||||||| ||| || | || || || | ||| || || || || Sbjct 282841 TTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAA 282900 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| ||||| |||||||| |||||||| ||||||||||||||||| | || ||| | Sbjct 282901 GATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTTGACGTT 282960 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || || || |||| || ||||| | || || |||||||| || || |||||||| Sbjct 282961 GTCAATGGTATCGGAAGACTCAACTTCCAAGGTAATGGTCTTACCGGTTAATGTCTTAAC 283020 Query 283088 GAATATCTGCATT 283100 ||| || |||||| Sbjct 283021 GAAGATTTGCATT 283033 >seq3 Length=2118207 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| || || ||| || || |||||||||||||||| ||| || | || || || Sbjct 53424 ACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCTACCGTCTTCC 53365 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | || || || || |||||||| | |||||||||| |||||||| |||||||| ||| Sbjct 53364 AACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGG 53305 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | || || | || || ||||| || | |||||||| | || || |||||| Sbjct 53304 ATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTA 53245 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || |||||||| ||||| || |||||||| Sbjct 53244 CCTGTTAAAGTCTTGACGAAAATTTGCATTTT 53213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738945184426