Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20lignosus_20[genbank_20GCA_5F001599395.1_202016-03- 01] 19 sequences; 16,592,489 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq9 136 3e-27 seq3 122 6e-23 >seq9 Length=507287 Score = 136 bits (150), Expect = 3e-27 Identities = 173/236 (73%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||| || |||| |||||| ||| ||||||||||||||||| Sbjct 282799 TTGCATACCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTA 282858 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| | |||| |||| ||||| || || ||||| |||||||| || Sbjct 282859 GTCAGAAAGAGTT--CTACCGTCTTCCAATTGCTTACCAGCGAAGATTAAACGCTGTTGG 282916 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 |||| ||| | ||||||||| || ||||| ||| | | | ||||| |||| Sbjct 282917 TCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTATCGGAA 282976 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||| ||||| ||||| || || | ||||| |||||||||||||| Sbjct 282977 GACTCAACTTCCAAGGTAATGGTCTTACCGGTTAATGTCTTAACGAAGATTTGCAT 283032 Score = 127 bits (140), Expect = 1e-24 Identities = 167/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| |||||| || | |||||| ||| ||||||||||||||||| Sbjct 282343 TTGCATACCACCTCTCAATCTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTA 282402 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| | |||| || | ||||| || || || || || | || || Sbjct 282403 GTCAGAAAGAGTT--CTACCGTCTTCYAATTGCTTACCRGCGAARATYAAWCKYTGTTGR 282460 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGC 44280 |||| ||| | ||||||||| || ||||| ||| | ||| | || || || | Sbjct 282461 TCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTT-RACGTTGTCAATRGTRTCRGA 282519 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || | ||||| ||||| || || | ||||| |||||||||||||| Sbjct 282520 AGAYTCAACYTCMARRGTAATGGTCTTACCRGTYAAWGTCTTRACGAAGATTTGCAT 282576 Score = 125 bits (138), Expect = 5e-24 Identities = 171/237 (72%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||| || || | |||||| ||| ||||||||||||||||| Sbjct 282115 TTGCATACCACCTCTCAATCTYAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTA 282174 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| | |||| || | ||||| ||||| || ||||| | || || Sbjct 282175 GTCAGAAAGAGTT--CTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGR 282232 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGC 44280 |||| ||| | ||||||||| || ||||| ||| || ||| | || ||||| | Sbjct 282233 TCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTT-AACGTTGTCAATRGTGTCAGA 282291 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || | ||||| ||||| || || | ||||| |||||||||||||| Sbjct 282292 AGATTCAACYTCAAGAGTAATGGTCTTACCAGTCAAAGTCTTRACGAAGATTTGCAT 282348 Score = 123 bits (136), Expect = 2e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-- 44168 || ||||||| ||| || || | |||||| ||| ||||||||||||||||| || | Sbjct 281894 CCACCTCTCAATCTTAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAA 281953 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 ||||| | |||| || | ||||| ||||| || ||||| | || || |||| || Sbjct 281954 AGAGTT--CTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAG 282011 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCC 44287 | | ||||||||| || ||||| ||| || ||| | |||||||| | ||||| Sbjct 282012 GAATACCTTCCTTGTCTTGGATCTTGGACTT-AACGTTGTCAATGGTGTCAGAAGATTCA 282070 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | ||||| ||||| || || | ||||| |||||||||||||| Sbjct 282071 ACCTCAAGAGTAATGGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 282120 Score = 118 bits (130), Expect = 8e-22 Identities = 171/237 (72%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| |||||| || | |||||| ||| ||||||||||||||||| Sbjct 282571 TTGCATACCACCTCTCAATCTCAAAACTAAGTGAAGAGTGGATTCCTTTTGGATGTTGTA 282630 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| | |||| || | ||||| ||||| || ||||| | || || Sbjct 282631 GTCAGAAAGAGTT--CTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGG 282688 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGC 44280 |||| ||| | ||||||||| || ||||| ||| || ||| | |||||||| | Sbjct 282689 TCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGACTT-AACGTTGTCAATGGTGTCAGA 282747 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || | || || ||||| || || | ||||| |||||||||||||| Sbjct 282748 CGACTCGACTTCAAGAGTGATAGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 282804 >seq3 Length=2118207 Score = 122 bits (134), Expect = 6e-23 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||||| ||| || |||| ||| | ||| |||||| ||||||||||| || | Sbjct 53442 CCACCTCTCAATCTTAAGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 53383 Query 44171 AGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 || || || |||| |||| |||||| || || |||||||| | || || || | | Sbjct 53382 AG--GGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTG 53325 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTC 44286 | | ||||||||| ||| ||||| ||| || ||| | |||||||||| ||| || Sbjct 53324 GAATACCTTCCTTGTCCTGGATCTTGGACTTGACATTGT--CAATGGTGTCGGAGGACTC 53267 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 53266 GACTTCCAAGGTAATGGTCTTACCTGTTAAAGTCTTGACGAAAATTTGCAT 53216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990316639723