Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 212 7e-50 seq1 111 2e-19 >seq2 Length=3116340 Score = 212 bits (234), Expect = 7e-50 Identities = 594/895 (66%), Gaps = 40/895 (4%) Strand=Plus/Plus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 |||||||| |||| || | || ||||| || ||||| ||||| |||| || || || Sbjct 2726149 TTTTGGTAGTCACTGACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCTAAGGAGATGTTC 2726208 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGA--TTCTTTTAAATCCCAATTCAGAAA 23961 |||||||| ||| |||| ||||| || || |||| ||||| | ||||| || || Sbjct 2726209 TCCATGAAGTCGAATGGGTTGGTGACGTTGTAGACCTTCTTGTTG--CCCAA---AGCAA 2726263 Query 23962 TCAAT---CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTA 24018 ||||| || || || || ||||| | ||| ||||| ||| |||||||||| Sbjct 2726264 TCAATAATCTGTCGGCAACGAACTCGACGTATTGACACATCAATTCGGCGTTCATTCCTA 2726323 Query 24019 -TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTT 24077 |||| |||||| | ||| |||| | |||||||| || || ||| || || || Sbjct 2726324 ATAAGGA-AACTGGCAAAGCATCAGTGAAGAATTCTTGCTCGATCTTGACAGCTTCAGTA 2726382 Query 24078 ATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAAT-----AAATGTTTAAACATCA 24132 || |||||| || | ||| ||| | | || || |||| || Sbjct 2726383 AT----GATCTT-CTCAACAATAACTGGGTCTGGTCTGTTTTGCAAGTGAGAGAACAACA 2726437 Query 24133 AACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGA 24192 |||| ||||| ||| ||||| ||| |||||||||| || ||||||||||| || || | Sbjct 2726438 AACAGGCGAAGTCGGTGTGTAAACCTTCGTCTCTACAGATCAATTCGTTGGAGAAAGTCA 2726497 Query 24193 GTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGA 24252 || ||||||| || | ||| || | ||| || || || || || |||||| || | Sbjct 2726498 AACCTGGCATTAAACCTCTCTTCTTCAACCAGAAGATAGAAGCGAAGGATCCACTGAAAA 2726557 Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT-----GTC 24307 | || || || || || || || || | | ||| || || ||| | ||| ||| Sbjct 2726558 AGATACCCTCAACAGCAGCGAAAGCTACTAATCTCTCACC-GAACAAG-GCTTCATCGTC 2726615 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 | ||||| | ||||| || ||||||||| | | ||| || || | || || || Sbjct 2726616 AGAGATCCATCTCAAGGCCCAGTCAGCCTTCTTTCTGATACATGGAATGTTGTCGATGGC 2726675 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTA 24425 || || || ||| ||| ||| || ||||| || || ||||| | ||||| || Sbjct 2726676 GTTGAAAAGGAAGTCGGCTTCCTTAGGGTCCTTAACGTAAGTGTCAATTAATAAAGAGTA 2726735 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 | | || || ||||||||||| || ||||| || ||||||||||| | || || Sbjct 2726736 T--GTCTCAGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTGGCTTCT 2726793 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCAC 24543 | || || ||||| | | || ||||| | || || || || || || || ||| Sbjct 2726794 GGGATTTGGACTTCAGCAGAGAA--GTTCTCAACCAAGTTCTCGTTGACAATACCATCAG 2726851 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGTGTTAGT--T 24600 ||| || || || ||||| | | | || || ||| ||||| ||| || | | | Sbjct 2726852 AGGCGGCGAAGAAAGCCAAGATACGGGAAATGAAGTATCTTTCGTTCTTGTTCAACTTGT 2726911 Query 24601 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 24660 ||||| ||| || |||| ||| | || | |||||| | ||||| || || || | Sbjct 2726912 GGTTCCAGTCAGTGGTATCCTTACTCAAGTCGATTTCTTCGGCGGTCCAGAAGGAGGCTT 2726971 Query 24661 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 | ||||| || ||||| | ||||| ||||| || | ||||| || | ||| || Sbjct 2726972 CAGCCTTCTTGTACATTTGCCAGACTTCATGGTACTTGATTGGGAAGAGAACGAA 2727026 Score = 188 bits (208), Expect = 8e-43 Identities = 1052/1677 (63%), Gaps = 29/1677 (2%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||| || |||| ||| | || | || || | || || ||||| || || || | | Sbjct 2773312 GTGAACTGGATGGCAGCAGCAGCAGCTTGTGTTCTTAAGTAATACATACCAGTCTTCAAA 2773371 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || |||| ||||| ||||||||| || || || | || || || Sbjct 2773372 CCCTTCTTCCAACCGTAGAAATGCATAGAGGTAAGCTTACCCATTGTTGGGTCCTTGATG 2773431 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 ||||| |||| ||| || || || |||||||| | ||||| |||||||| | || Sbjct 2773432 TGGATGTTCAAAGACTGTGACTGGTCAATGAAGGCAGCTCTGTCAGCAGCCATGTCAATA 2773491 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || |||||||| |||||||||| ||| ||||| | ||||| || ||||||| Sbjct 2773492 ATATGCTTTTGTGAGATTTCCCAAACAGTCTTATATAAGGCCTTAAGCTCATCTGGAACA 2773551 Query 53048 TTTGT--ATT-CTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | || ||| ||||| ||| | || || | ||||| || |||| ||| Sbjct 2773552 TTAGGCAATGACTGGATAGAACCATTGTTAGAAATGATGTTGTTCTTCATGGCATCGTTC 2773611 Query 53105 CATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 53161 || | | | | ||| ||| | | | | | || || || | |||||||| Sbjct 2773612 CAGA---TACCCAAGTCGACCAAATCACGCAACAAGTATGGGTTGACAATCTGAAATTCA 2773668 Query 53162 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 53221 |||| ||| ||||| | || ||| || ||| || || ||||| | | | || || || Sbjct 2773669 CCAGCCAACACTCTTCTAGAGTAGATGTTAGATGTGTATGGTTCAAAACATTCGTTGTTA 2773728 Query 53222 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 53281 ||||| ||||| | |||||| ||||| ||||| || || ||||| ||| |||||| | | Sbjct 2773729 CCCAAGATTTGGGAAGTTGAGGCAGTTGGCATTGGGGCGACCAACAAAGAATTTCTCAAA 2773788 Query 53282 CCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 53341 |||| | | || | || | | ||||| | ||| | || | || Sbjct 2773789 CCGTGCTTAGCCAACTTCTGCTTCAAGGAATCCCAGTCCCATAACTCAGTTGGCTTTCTG 2773848 Query 53342 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTAT 53401 ||||| | || | || || || | || | ||||| Sbjct 2773849 TCCCACAAGTCATATTGTAACAATCCTTGGGAAGCTGGAGAGCCCTCGTAAGACTCGTAA 2773908 Query 53402 GGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCG 53461 || ||||| | |||| | ||| | || || | ||||||| ||| || ||||| Sbjct 2773909 GGGCCTTCTTCGGCAGCCAATTCGATAGAGGCTTCAACGGCACCGTGATAGATAGTTTCA 2773968 Query 53462 AAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA-AT 53520 ||||| | | || | ||| || || || || ||||| |||| | | | || Sbjct 2773969 AAGATTTGGATGTTCAATTCTCTAGCCTCTTGGGAGTCGAATGG-TAATCTCAATGCCAT 2774027 Query 53521 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 53580 || | || || || ||||| ||||| | | | || ||||| | |||||| ||||| | Sbjct 2774028 GAAGGTATCAGCCAAACCTTGGACACCCAAAGCAATTGGTCTGTTTCTCTTGTTAGATCT 2774087 Query 53581 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTC---TGAC 53637 |||||||| |||| || || || || | || || || || || | ||| | |||| Sbjct 2774088 CTCAGCTTCCGGAACTGGGTAGTAGTTTCTGTCAATGATCTTGTTCAAGTTACGAGTGAC 2774147 Query 53638 --AATT----ACTTTGACCACATCCTTCAGTTTG----AGAAAATCAAATTGTCCATCTA 53687 | || |||| | || | || | ||| | ||| | ||||| ||| Sbjct 2774148 GGACTTGGTGACTTCGTGCAACTTCTCAAAGTTGTACCACAAAGACTTGCTGTCCTTCTC 2774207 Query 53688 TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 53747 || | | | || ||||| || |||| ||||| || || || || | | | Sbjct 2774208 AGCAAAGGAAGGTAAA-GCAATGGAGGCCAAGTTACAGACAGCAACTTCCTCTGGGGAAG 2774266 Query 53748 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 53807 || | || || ||| || | ||| | ||||||| | || || || | ||| | Sbjct 2774267 AGTACTCTACGATTTCACAACACAAGTTAGAAGACTTGATTATACCCAAGTTCTTTTGGT 2774326 Query 53808 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGG 53867 | |||| |||||||| || ||||| || | ||||| || ||||| || ||| |||||| Sbjct 2774327 TGGTCTTCTTGTTACAGGCGTCCTTGTACAACATGAAAGGAGTACCGGTCTCAGTCTGGG 2774386 Query 53868 ATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT--TTC 53925 || | ||| || | ||| | | ||||| | | ||| | |||| ||| Sbjct 2774387 CCTCCAAAATGGCGTACCACAACTTTTGGGCCTTGACAGTG--TTTCTTCCTCTACCTTC 2774444 Query 53926 TCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGG 53985 ||| ||||| || ||||| ||| || ||||| || | || | ||| || || Sbjct 2774445 TCTCTCGTAACGTTCGTACAACTCTTCGAATTCGTCACCGTATACTTCTGGCAAGCCTGG 2774504 Query 53986 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 54045 | ||| | ||| | | | | ||| || |||| | | |||| ||||| || | Sbjct 2774505 AGCTTCGTTTGGAGAGAAAAGAGTCCAATCACCGTTTTGTTCGACTCTCTTCATGAACAA 2774564 Query 54046 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 54105 || |||||||| | |||| || | |||||| | |||| || || || || || Sbjct 2774565 GTCTGGAATCCACAAAGCTGGGAACAAATCTCTAGCTCTAATCTCTTCCTTACCGTGGTT 2774624 Query 54106 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCAT 54165 |||| | | ||| | ||| | | ||| || | ||||| ||||||||||||| || | Sbjct 2774625 CTTTCTGATATCAATGAAGTCGAAAATGTCTGCGTGCCATGGTTCCAAGTATAAGGCAAA 2774684 Query 54166 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 54225 | | || || || ||||| || || || || | ||||||||| || ||||| | || | Sbjct 2774685 AGCACCTGGACGCTTGTTACCACCTTGGTCAACGTATCTAGCAGTATTATTGAAGACACG 2774744 Query 54226 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 54285 | ||||||||| ||||| ||||||| ||| || || || | || ||| ||| | | Sbjct 2774745 AACCATTGGAATGATACCGTTGGATGTACCGTTAGTACCAGCAATGTAGGCACCAGTAGA 2774804 Query 54286 ACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCG 54345 |||||| || || || ||| || || || || | || || || || || || Sbjct 2774805 ACGAATGTTGTGGATGTGTAAACCAATACCACCAGCACTCTTGGAAATCAAGGCACAGGT 2774864 Query 54346 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||||| || || || || || || ||| || ||| ||||| | || ||||| Sbjct 2774865 CTTTAAAGTGTCGTAAATTCCGTCAATAGAGTCGTCCTTCATGGCGACAAGGAAACAAGA 2774924 Query 54406 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 ||||||||| || || || || || || || || |||||| |||| || || Sbjct 2774925 AGACATTTGTGGAGATGGGGTACCAGCGTTGAACAAAGTTGGAGAACCGTGAGTGAA 2774981 >seq1 Length=3488706 Score = 111 bits (122), Expect = 2e-19 Identities = 222/329 (67%), Gaps = 0/329 (0%) Strand=Plus/Minus Query 53952 CAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACC 54011 ||||||| ||||| || || ||||||| ||| ||| || || | | || |||| Sbjct 3155161 CAAACTCTTCTCCGTAACAATCTGCCAATCCTGGAGCTTCGTCTGGGGAAAATAAGGACC 3155102 Query 54012 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 54071 | || | | | || || | | ||| || | ||| |||||||| ||| | | ||| | Sbjct 3155101 AATCCTCATTGTTTTTGACCCTCTCCATGAATAAATCCGGAATCCATAGACCAAAAAACA 3155042 Query 54072 GATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 54131 ||||| || || | ||||| || || ||||| || | ||| | || | | | Sbjct 3155041 AATCTCGCGTCCTGAGCTCCTCTTTGCCGTGGTTCTTCTTCAAATCCAAGATTTCAAAGA 3154982 Query 54132 TATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCT 54191 ||||||||||| || || || ||||| | | | |||| || | |||||| ||||| | Sbjct 3154981 CGTCAGAATGCCATGGCTCTAAATATATAGCAAAAGCTCCTGGTCTTTTGTTCCCTCCTT 3154922 Query 54192 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 54251 |||| | |||||||| |||| |||| | ||| | | ||| || | | ||| ||| || Sbjct 3154921 GATCCACATATCTAGCTGTGTCATTAAATACTTTAAGCATAGGCACCAACCCACTGGCTG 3154862 Query 54252 CACCATTGGTCCCGGAGATATAGCTTCCA 54280 ||||||||| | || |||| | |||| Sbjct 3154861 TACCATTGGTACTGGCTATATGGGCTCCA 3154833 Score = 109 bits (120), Expect = 7e-19 Identities = 318/485 (66%), Gaps = 5/485 (1%) Strand=Plus/Minus Query 52826 GATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAA 52885 ||||| | || || || | ||||||||||| ||||| | || |||| ||||| Sbjct 3156320 GATGCAGCTTGTGTTCGCAAGTAGTACATTCCAGTTTTCAATCCCTTGTTCCAAGCGTAA 3156261 Query 52886 AAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 52945 ||||| ||| || || || | | | || | | || || ||||||||| || Sbjct 3156260 AAATGACAACTCGTAAGCTTTCCAAACGTTGGGTTTTGTAAGTGAATATTCATACTCTGC 3156201 Query 52946 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATT 53005 || || || || ||| || || || ||||| | | || |||||| | ||| Sbjct 3156200 AGCTGGTCAATAAACTTTCCTCTATCGGCCGCCATGTCGACAATGACCTTTTGCGAAATC 3156141 Query 53006 TCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTT-GTAT--TCTGAAT 53061 ||||| | ||||||||| || || ||| || || | ||| | ||| |||| ||||||| Sbjct 3156140 TCCCACACAGTTTTATACAAGTC-CTTTATCTCCTGTGGGATATTTGGTATGCTCTGAAT 3156082 Query 53062 AGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGT 53121 |||||| || | |||||| | ||| | ||| || ||||||| | ||| | Sbjct 3156081 GGATCCATTTTCAAGAATAATCTTGTTCCTCATCGCAGACGTCCATAAACCTAAGTCGAT 3156022 Query 53122 TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 53181 |||| | | | || | | ||| |||| || || |||||||| | ||||| | || Sbjct 3156021 TAAATCCTTCAATAGGTACTTATTTACTATCTGGAACTCTCCAGAAAGCACTCTTCTTGT 3155962 Query 53182 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 53241 || | ||| |||||||| || | | |||||| || | ||| || | ||| || Sbjct 3155961 ATATAAATTGGAAGTATACGGCTCAAAGCATTCATTAAAGCCGAGAATCTGTGAAGTCGA 3155902 Query 53242 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 53301 |||||| ||||| |||||||| || || ||||| || || | | | ||| || || Sbjct 3155901 TGCAGTAGGCATCGGTGCCACTAACAAGGAGTTTCTGAGGCCATGTACTTTGACTTGATT 3155842 Query 53302 TTTTA 53306 |||| Sbjct 3155841 CTTTA 3155837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721525784800