Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 176 5e-39 seq6 105 7e-18 >seq2 Length=3116340 Score = 176 bits (194), Expect = 5e-39 Identities = 549/848 (65%), Gaps = 9/848 (1%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||| || || ||||| | ||||| || | |||| || | |||| |||||| Sbjct 2727041 GAGAACAAGCGTCGTTTCGTTCTCTTCCCAATCAAGTACCATGAAGTCTGGCAAATGTAC 2726982 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || ||||| || || || |||||||||| ||| || | ||| || ||||| || | Sbjct 2726981 AAGAAGGCTGAAGCCTCCTTCTGGACCGCCGAAGAAATCGACTTGAGTAAGGATACCACT 2726922 Query 116711 GACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 |||||| | | | |||||| | ||||| | | ||||| | | |||| || Sbjct 2726921 GACTGGAACCACAAGTTGAACAAGAACGAAAGATACTTCATTTCCCGTATCTTGGCTTTC 2726862 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 ||||||||| || || || ||||||||||| |||| ||| ||| || || || Sbjct 2726861 TTCGCCGCCTCTGATGGTATTGTCAACGAGAACTTGGTTGAGAACTTCTCTGCTGAAGTC 2726802 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 || | | || || ||| |||||||| || || || ||||| ||| | ||||| Sbjct 2726801 CAAATCCCAGAAGCCAAGTGTTTCTACGGTTTCCAAATTATGATGGAAAACATTCACTCT 2726742 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGT 116944 || | || || | || ||||| ||||| | | || ||| | | ||| | Sbjct 2726741 GAGACATACTCTTTATTAATTGACACTTACGTTAAGGACCCTAAGGAAGCCGACTTCCTT 2726682 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 || ||||||||||| | || || || ||| | ||||||| || ||||| || | Sbjct 2726681 TTC---AACGCCATCGACAACATTCCATGTATCAGAAAGAAGGCTGACTGGGCCTTGAGA 2726625 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 |||||| | | | || ||| ||||| ||| | | || || ||||| || || ||| Sbjct 2726624 TGGATCTCTGACGATGAAGCCTTGTTCGGTGAGAGATTAGTAGCTTTCGCTGCTGTTGAG 2726565 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 || |||| || || ||||| | || || ||| | ||||| | || | ||| Sbjct 2726564 GGTATCTTTTTCAGTGGATCCTTCGCTTCTATCTTCTGGTTGAAGAAGAGAGGTTTAATG 2726505 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTT 117184 || || |||||||| |||||| | |||| || ||||| ||| | || |||||| Sbjct 2726504 CCAGGTTTGACTTTCTCCAACGAATTGATCTGTAGAGACGAAGGTTTACACACCGACTTC 2726445 Query 117185 GCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATC 117244 ||||||||| ||||| || ||| | |||| | | | || | ||||| Sbjct 2726444 GCCTGTTTGTTGTTCTCTCACTTGCAAAACAGACCAGACCCAGTTATTGTTGAGAAGATC 2726385 Query 117245 GTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTG 117304 | || || || ||| |||||||| ||| |||| || || |||| || | Sbjct 2726384 ATTACTGAAGCTGTCAAGATCGAGCAAGAATTCTTCACTGATGCTTTGCCAGTTTCCTTA 2726325 Query 117305 CTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTG 117364 | ||| | || |||| ||||| |||||| |||||||||| |||||||| | || Sbjct 2726324 TTAGGAATGAACGCCGAATTGATGTGTCAATACGTCGAGTTCGTTGCCGACAGATTATTG 2726265 Query 117365 CTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTC 117424 | | ||| | | ||| ||||||| ||||||| | ||||| ||| | | Sbjct 2726264 ATTGCTTTGGGCAACAAGAAGGTCTACAACGTCACCAACCCATTCGACTTCATGGAGAAC 2726205 Query 117425 ATCTCCTT 117432 |||||||| Sbjct 2726204 ATCTCCTT 2726197 >seq6 Length=1682205 Score = 105 bits (116), Expect = 7e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || | || || || ||||| ||| | || ||||| || Sbjct 47113 AAAATGCAAATTTTCGTCAAGACTTTAACTGGTAAGACCATTACCTTGGAAGTCGAGTCC 47172 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || |||| ||||| || || || || | ||| Sbjct 47173 TCCGACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGTATTCCACCTGAC 47232 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||| || | |||| ||| || || ||| |||| |||| | || || |||||| Sbjct 47233 CAACAAAGATTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACTCTTTCTGACTAC 47292 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 |||||||||||||| |||| |||| | || || | ||||| || || || Sbjct 47293 AACATCCAGAAGGAATCCACCTTGCACTTGGTCTTAAGATTGAGAGGTGGTGG 47345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219135597600