Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6 125 6e-24 seq8 118 8e-22 >seq6 Length=1682205 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||||||||| |||||||||| ||| |||||||| ||||||||||| Sbjct 47342 CCACCTCTCAATCTTAAGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCAGAA 47283 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | |||| |||| || || || ||||| ||||| | |||||||| || || Sbjct 47282 AGAGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGA 47223 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||||||| ||| || ||| || | | | |||| ||| || Sbjct 47222 ATACCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACT 47163 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 |||| |||||| ||||| || || | |||||| || || |||||||| ||| || Sbjct 47162 TCCAAGGTAATGGTCTTACCAGTTAAAGTCTTGACGAAAATTTGCATTTTGGCT 47109 >seq8 Length=506948 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||||||||| |||||||| || ||| ||||| || |||||||||||| Sbjct 221740 CCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 221681 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | |||| |||| ||| || || ||||| || || || |||||||| || || Sbjct 221680 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAGATTAAACGTTGTTGGTCTGGTGGA 221621 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||| || || || ||| || | | |||| | || || Sbjct 221620 ATACCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACT 221561 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||| |||||| ||||| || |||| ||||| || |||||||||||||| Sbjct 221560 TCCAAGGTAATGGTCTTACCGGTCAATGTCTTAACGAAGATTTGCATGTT 221511 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||||||||| |||||||| || ||| ||||| || |||||||||||| Sbjct 221968 CCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 221909 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | |||| |||| ||| || || ||||| || || || |||||||| || || Sbjct 221908 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAGATTAAACGTTGTTGGTCTGGTGGA 221849 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| || || ||| || | | | |||| | || || Sbjct 221848 ATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCGACT 221789 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| ||||| || |||| |||||| || || |||||||| Sbjct 221788 TCAAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 221742 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTT 45168 |||||||||||||||||||||||||| || ||| ||||| || ||||||||||| | | Sbjct 222196 CCACCTCTCAATCTTAATACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 222137 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | | |||| |||| ||| || || || || ||||| | |||||||| || || Sbjct 222136 AAGGT-TCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGG 222078 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||| |||||||| || || ||| || | | | |||| | || || Sbjct 222077 AATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAAC 222018 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| ||||| || |||| |||||| || || |||||||| Sbjct 222017 TTCAAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 221970 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTT 45168 ||||||||||||||||| |||||||| || ||| ||||| || ||||||||||| | | Sbjct 222424 CCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 222365 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | | |||| || | ||| || |||||||| ||||| | |||||||| || || Sbjct 222364 AAGGT-TCTGCCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTGG 222306 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||| |||||||| || || |||||| | | |||| ||| || Sbjct 222305 AATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATAGTGTCAGAGGACTCGAC 222246 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| ||||| || |||| ||||| || || |||||||| Sbjct 222245 TTCAAGAGTAATAGTCTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 222198 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||||||| || |||||||| || ||| ||||| || ||||||||||| Sbjct 222652 CCTCCTCTCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAA 222593 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | |||| |||| ||| || || || || ||||| | |||||||| || || Sbjct 222592 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGA 222533 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| || || |||||| | | |||| ||| || Sbjct 222532 ATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATAGTGTCAGAGGACTCAACT 222473 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || |||| |||||| || || |||||||| Sbjct 222472 TCGAGGGTGATAGTCTTACCGGTCAAAGTCTTGACGAAAATTTGCAT 222426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075151850210