Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 219 5e-52 seq1 122 1e-22 >seq2 Length=3116340 Score = 219 bits (242), Expect = 5e-52 Identities = 589/888 (66%), Gaps = 26/888 (3%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| |||| || | || ||||| || ||||| || || | || || || || Sbjct 2726149 TTTTGGTAGTCACTGACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCTAAGGAGATGTTC 2726208 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||| || || || ||||| || ||||| | || || ||||| || |||| Sbjct 2726209 TCCATGAAGTCGAATGGGTTGGTGACGTTGTAGACCTTCTTGTTGCCCAA---AGCAATC 2726265 Query 33411 AAT---CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATG 33467 ||| || || || ||||| || | ||| ||||| ||| |||||||||| Sbjct 2726266 AATAATCTGTCGGCAACGAACTCGACGTATTGACACATCAATTCGGCGTTCATTCCTAAT 2726325 Query 33468 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATA 33527 | |||||| | ||| |||| | |||||||| || || || || | || || Sbjct 2726326 AAGGAAACTGGCAAAGCATCAGTGAAGAATTCTTGCTCGATCTTGACAGCTTCAGTAATG 2726385 Query 33528 ATAAATCT-AACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGC 33586 || ||| ||| | || ||| | | || || |||| |||||| || Sbjct 2726386 ATCT-TCTCAACAATAACTGGGTCTGGTCTGTTTTGCAAGTGAGAGAACAACAAACAGGC 2726444 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 ||| ||| ||| | ||| |||||||||| || |||||||| || || || | || || Sbjct 2726445 GAAGTCGGTGTGTAAACCTTCGTCTCTACAGATCAATTCGTTGGAGAAAGTCAAACCTGG 2726504 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706 ||||| || | ||| || | ||| || || |||||||| ||||| || ||||| || Sbjct 2726505 CATTAAACCTCTCTTCTTCAACCAGAAGATAGAAGCGAAGGATCCACTGAAAAAGATACC 2726564 Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-----GTCATGTATC 33761 || || ||||| || || | | |||||| || ||| | ||| |||| ||| Sbjct 2726565 CTCAACAGCAGCGAAAGCTACTAATCTCTCACCG-AACAAG-GCTTCATCGTCAGAGATC 2726622 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 || | ||||| || ||||||||| | | ||| || || | || ||||| || || Sbjct 2726623 CATCTCAAGGCCCAGTCAGCCTTCTTTCTGATACATGGAATGTTGTCGATGGCGTTGAAA 2726682 Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAA--AAGACTATACATTT 33879 || ||| ||| ||| || ||||| ||||| || || || |||| ||| | | Sbjct 2726683 AGGAAGTCGGCTTCCTTAGGGTCCTTAACGTAAGTGTCAATTAATAAAGAGTATG--TCT 2726740 Query 33880 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33939 | || ||||||||||| || || || || ||||||||||| | || || | || | Sbjct 2726741 CAGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTGGCTTCTGGGATTT 2726800 Query 33940 GCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 | ||||| | | | || ||||| | || || || || || || |||||| ||| || Sbjct 2726801 GGACTTCAGCAGAGAA--GTTCTCAACCAAGTTCTCGTTGACAATACCATCAGAGGCGGC 2726858 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGTGTTAGT--TTATTCCA 34054 || || ||||| | | | || || ||| ||||| ||| || | | | ||||| Sbjct 2726859 GAAGAAAGCCAAGATACGGGAAATGAAGTATCTTTCGTTCTTGTTCAACTTGTGGTTCCA 2726918 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 ||| || |||| ||| | || | |||||| | ||||| || || || || ||||| Sbjct 2726919 GTCAGTGGTATCCTTACTCAAGTCGATTTCTTCGGCGGTCCAGAAGGAGGCTTCAGCCTT 2726978 Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || ||||| | ||||| ||||| || | ||||||||| | ||| || Sbjct 2726979 CTTGTACATTTGCCAGACTTCATGGTACTTGATTGGGAAGAGAACGAA 2727026 Score = 185 bits (204), Expect = 1e-41 Identities = 562/866 (65%), Gaps = 2/866 (0%) Strand=Plus/Plus Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63078 ||||||| | || || || | ||| || |||| |||||||| || ||||| || | | Sbjct 2774300 ACTTGATTATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTACAGGCGTCCTTGTACAACA 2774359 Query 63079 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63138 |||| |||||||| || ||| |||| | || | ||| || | ||| | | | |||| Sbjct 2774360 TGAAAGGAGTACCGGTCTCAGTCTGGGCCTCCAAAATGGCGTACCACAACTTTTGGGCCT 2774419 Query 63139 TTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGT 63198 | | | | | ||| | |||||| ||||| | ||||| |||||| |||| Sbjct 2774420 TGACAGTGTTTCTTCCTCTACCTTCTCTCTCGTAACGTTCGTACAACTCTTCGAATTCGT 2774479 Query 63199 CTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63258 | || | || | ||| | ||| ||| | ||| | | | | ||| || |||| Sbjct 2774480 CACCGTATACTTCTGGCAAGCCTGGAGCTTCGTTTGGAGAGAAAAGAGTCCAATCACCGT 2774539 Query 63259 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTG 63318 | | |||| ||||| || | || |||||||| | |||| || | |||||| | Sbjct 2774540 TTTGTTCGACTCTCTTCATGAACAAGTCTGGAATCCACAAAGCTGGGAACAAATCTCTAG 2774599 Query 63319 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63378 |||| || || || || |||||| | | ||| | ||| | | ||| || | | Sbjct 2774600 CTCTAATCTCTTCCTTACCGTGGTTCTTTCTGATATCAATGAAGTCGAAAATGTCTGCGT 2774659 Query 63379 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63438 |||| ||||||||||||| ||| | | | || || || ||||| || || || || | || Sbjct 2774660 GCCATGGTTCCAAGTATAAGGCAAAAGCACCTGGACGCTTGTTACCACCTTGGTCAACGT 2774719 Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498 ||||||| || ||||| | || | | ||||||||| |||||||| ||| |||| || | Sbjct 2774720 ATCTAGCAGTATTATTGAAGACACGAACCATTGGAATGATACCGTTGGATGTACCGTTAG 2774779 Query 63499 TACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTG 63558 |||| | || ||| | ||| | | |||||| || || || ||| || || || | Sbjct 2774780 TACCAGCAATGTAGGCACCAGTAGAACGAATGTTGTGGATGTGTAAACCAATACCACCAG 2774839 Query 63559 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCAT 63618 | | || || || || || || ||||| ||||| || || || || || || | Sbjct 2774840 CACTCTTGGAAATCAAGGCACAGGTCTTTAAAGTGTCGTAAATTCCGTCAATAGAGTCGT 2774899 Query 63619 CGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATA 63678 | ||||| | || ||||| ||||||||| || | || || || || || | Sbjct 2774900 CCTTCATGGCGACAAGGAAACAAGAAGACATTTGTGGAGATGGGGTACCAGCGTTGAACA 2774959 Query 63679 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63738 | || |||||| |||| || || | || || | | ||||| | ||||| | Sbjct 2774960 AAGTTGGAGAACCGTGAGTGAAGAAACGTTGGGACATCAAGTTGTAAGATTCAATGACCT 2775019 Query 63739 AGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63797 || ||||| || | || || || | | || | ||| | || || || |||||| Sbjct 2775020 TCTCGATATCATCACCG-TGGATACCAATAGAAACTCTCATAATCAAATGTTGTGGTCTT 2775078 Query 63798 TCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63857 ||| ||| || ||| | || | ||| ||| | || || || || |||||||| Sbjct 2775079 TCAGCAACCTTACCGTTGACACGTAAAAGGTATGATCTCTCTAAGGTCTTGAAACCAAAG 2775138 Query 63858 TAGTTGTATGAAAAGTCTCGTTCGTA 63883 ||||| || ||||| || ||||| Sbjct 2775139 TAGTTATAATTGAAGTCACGATCGTA 2775164 >seq1 Length=3488706 Score = 122 bits (134), Expect = 1e-22 Identities = 328/497 (66%), Gaps = 5/497 (1%) Strand=Plus/Minus Query 62064 GATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAA 62123 ||||| | || || || | ||||||||||| ||||| | || |||| ||||| Sbjct 3156320 GATGCAGCTTGTGTTCGCAAGTAGTACATTCCAGTTTTCAATCCCTTGTTCCAAGCGTAA 3156261 Query 62124 AAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 62183 ||||| |||||| || || | | | || | | || || ||||||||| || Sbjct 3156260 AAATGACAACTCGTAAGCTTTCCAAACGTTGGGTTTTGTAAGTGAATATTCATACTCTGC 3156201 Query 62184 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATT 62243 || || || || ||| || || || ||||| | | || |||||| | ||| Sbjct 3156200 AGCTGGTCAATAAACTTTCCTCTATCGGCCGCCATGTCGACAATGACCTTTTGCGAAATC 3156141 Query 62244 TCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-TAT--TCTGAAT 62299 ||||| | ||||||||| || || ||| || || | ||| | |||| ||| ||||||| Sbjct 3156140 TCCCACACAGTTTTATACAAGTC-CTTTATCTCCTGTGGGATATTTGGTATGCTCTGAAT 3156082 Query 62300 GGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGT 62359 ||||||| || | |||||| | ||| | ||| || ||||||| | ||| | Sbjct 3156081 GGATCCATTTTCAAGAATAATCTTGTTCCTCATCGCAGACGTCCATAAACCTAAGTCGAT 3156022 Query 62360 TAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGT 62419 |||| | | | || | | || |||| ||||| |||||||| | ||||| | || Sbjct 3156021 TAAATCCTTCAATAGGTACTTATTTACTATCTGGAACTCTCCAGAAAGCACTCTTCTTGT 3155962 Query 62420 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62479 || | ||| |||||||| || | | |||||| || | ||| || | ||| || Sbjct 3155961 ATATAAATTGGAAGTATACGGCTCAAAGCATTCATTAAAGCCGAGAATCTGTGAAGTCGA 3155902 Query 62480 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62539 |||||| ||||| |||||||| || || ||||| || || | | | ||| || || Sbjct 3155901 TGCAGTAGGCATCGGTGCCACTAACAAGGAGTTTCTGAGGCCATGTACTTTGACTTGATT 3155842 Query 62540 TTTTAGATGTTCCCAAT 62556 |||| | ||||||| Sbjct 3155841 CTTTAATTCATCCCAAT 3155825 Score = 107 bits (118), Expect = 2e-18 Identities = 220/327 (67%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 63192 AACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCAC 63251 ||||| ||||| || || |||||| ||| ||| || || | | || ||||| Sbjct 3155159 AACTCTTCTCCGTAACAATCTGCCAATCCTGGAGCTTCGTCTGGGGAAAATAAGGACCAA 3155100 Query 63252 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 63311 || | | | || || | | ||| || | ||| |||||||| ||| | | ||| | | Sbjct 3155099 TCCTCATTGTTTTTGACCCTCTCCATGAATAAATCCGGAATCCATAGACCAAAAAACAAA 3155040 Query 63312 TCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 63371 |||| || || | ||||| || || ||||| || | ||| | || | | | Sbjct 3155039 TCTCGCGTCCTGAGCTCCTCTTTGCCGTGGTTCTTCTTCAAATCCAAGATTTCAAAGACG 3154980 Query 63372 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGA 63431 ||||||||||| || || || ||||| || | | |||| || | |||||| ||||| ||| Sbjct 3154979 TCAGAATGCCATGGCTCTAAATATATAGCAAAAGCTCCTGGTCTTTTGTTCCCTCCTTGA 3154920 Query 63432 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATA 63491 || | |||||||| |||| |||| | ||| | | ||| || | | || | | | || Sbjct 3154919 TCCACATATCTAGCTGTGTCATTAAATACTTTAAGCATAGGCACCAACCCACTGGCTGTA 3154860 Query 63492 CCATTGGTACCGGAGATATAGCCTCCA 63518 |||||||||| || |||| | ||||| Sbjct 3154859 CCATTGGTACTGGCTATATGGGCTCCA 3154833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817521272800