Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 215 7e-51 seq1 116 5e-21 >seq2 Length=3116340 Score = 215 bits (238), Expect = 7e-51 Identities = 590/892 (66%), Gaps = 34/892 (4%) Strand=Plus/Plus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 |||||||| |||| || | || ||||| || ||||| ||||| |||| || || || Sbjct 2726149 TTTTGGTAGTCACTGACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCTAAGGAGATGTTC 2726208 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 |||||||| |||||||| ||| | || || || | || || ||||| || |||| Sbjct 2726209 TCCATGAAGTCGAATGGGTTGGTGACGTTGTAGACCTTCTTGTTGCCCAA---AGCAATC 2726265 Query 35987 AAT---CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA-T 36042 ||| || || || || || || | ||| ||||| ||| |||||||||| | Sbjct 2726266 AATAATCTGTCGGCAACGAACTCGACGTATTGACACATCAATTCGGCGTTCATTCCTAAT 2726325 Query 36043 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 36102 ||| |||||| | ||| |||| | |||||||| || || ||| || || || || Sbjct 2726326 AAGGA-AACTGGCAAAGCATCAGTGAAGAATTCTTGCTCGATCTTGACAGCTTCAGTAAT 2726384 Query 36103 AAT------AGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAA 36156 || | || |||| ||| || | | || || |||| ||| Sbjct 2726385 GATCTTCTCAACAATAACTGGGTCTGGTCTGTTTTGC------AAGTGAGAGAACAACAA 2726438 Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| ||||| ||| ||||| ||| |||||||||| || ||||||||||| || || | Sbjct 2726439 ACAGGCGAAGTCGGTGTGTAAACCTTCGTCTCTACAGATCAATTCGTTGGAGAAAGTCAA 2726498 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 || ||||||| || | ||| || | ||| || || || || || |||||| || || Sbjct 2726499 ACCTGGCATTAAACCTCTCTTCTTCAACCAGAAGATAGAAGCGAAGGATCCACTGAAAAA 2726558 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAA-CCGGCACTGTCATG 36333 || || || || || || || || | | |||||| || | || | || |||| Sbjct 2726559 GATACCCTCAACAGCAGCGAAAGCTACTAATCTCTCACCGAACAAGGCTTCATCGTCAGA 2726618 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| | ||||| || ||||||||| | | ||| || || | || || || || Sbjct 2726619 GATCCATCTCAAGGCCCAGTCAGCCTTCTTTCTGATACATGGAATGTTGTCGATGGCGTT 2726678 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATAC 36451 || || ||| ||| ||| || ||||| || || ||||| | ||||| ||| Sbjct 2726679 GAAAAGGAAGTCGGCTTCCTTAGGGTCCTTAACGTAAGTGTCAATTAATAAAGAGTAT-- 2726736 Query 36452 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 36511 | || || ||||||||||| || ||||| || ||||||||||| | || || | Sbjct 2726737 GTCTCAGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTGGCTTCTGGG 2726796 Query 36512 ATCTGTACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTGG 36569 || || ||||| | | | || ||||| | || || || || || || || ||| || Sbjct 2726797 ATTTGGACTTCAGCAGAGAA--GTTCTCAACCAAGTTCTCGTTGACAATACCATCAGAGG 2726854 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTT-TGGTGTTAGT--TTAT 36626 | || || || ||||| | | | || || ||| ||||||| | || | | | | Sbjct 2726855 CGGCGAAGAAAGCCAAGATACGGGAAATGAAGTATCTTTCGTTCTTGTTCAACTTGTGGT 2726914 Query 36627 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 36686 |||| ||| || |||| ||| | || | |||||| | ||||| || || || || | Sbjct 2726915 TCCAGTCAGTGGTATCCTTACTCAAGTCGATTTCTTCGGCGGTCCAGAAGGAGGCTTCAG 2726974 Query 36687 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 |||| || ||||| | ||||| ||||| || | ||||| || | ||| || Sbjct 2726975 CCTTCTTGTACATTTGCCAGACTTCATGGTACTTGATTGGGAAGAGAACGAA 2727026 Score = 192 bits (212), Expect = 8e-44 Identities = 575/883 (65%), Gaps = 6/883 (1%) Strand=Plus/Plus Query 65812 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 65871 ||||||| | || || || | ||| || |||| |||||||| || ||||| || | | Sbjct 2774300 ACTTGATTATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTACAGGCGTCCTTGTACAACA 2774359 Query 65872 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 65931 |||| |||||||| || ||| |||| | || | ||| || | ||| | | | |||| Sbjct 2774360 TGAAAGGAGTACCGGTCTCAGTCTGGGCCTCCAAAATGGCGTACCACAACTTTTGGGCCT 2774419 Query 65932 TTATTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 65989 | | | ||| | |||| |||||| ||||| || ||||| |||||| || Sbjct 2774420 TGACAGTG--TTTCTTCCTCTACCTTCTCTCTCGTAACGTTCGTACAACTCTTCGAATTC 2774477 Query 65990 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 66049 ||| || | || | ||| || ||| ||| | ||| | | | | ||| || || Sbjct 2774478 GTCACCGTATACTTCTGGCAAGCCTGGAGCTTCGTTTGGAGAGAAAAGAGTCCAATCACC 2774537 Query 66050 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCT 66109 || | | |||| ||||| || | || |||||||| | |||| || |||||||| Sbjct 2774538 GTTTTGTTCGACTCTCTTCATGAACAAGTCTGGAATCCACAAAGCTGGGAACAAATCTCT 2774597 Query 66110 GGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATA 66169 | |||| || || || || |||||| | | ||| | ||| | | ||| || Sbjct 2774598 AGCTCTAATCTCTTCCTTACCGTGGTTCTTTCTGATATCAATGAAGTCGAAAATGTCTGC 2774657 Query 66170 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 66229 ||||| ||||||||||||| ||| | | | || || || ||||| || || || || | Sbjct 2774658 GTGCCATGGTTCCAAGTATAAGGCAAAAGCACCTGGACGCTTGTTACCACCTTGGTCAAC 2774717 Query 66230 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATT 66289 ||||||||| || ||||| | || | | ||||||||| ||||| ||||||||||| || Sbjct 2774718 GTATCTAGCAGTATTATTGAAGACACGAACCATTGGAATGATACCGTTGGATGTACCGTT 2774777 Query 66290 GGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCC 66349 || || | || ||| ||| | | |||||| || || || ||| || || || Sbjct 2774778 AGTACCAGCAATGTAGGCACCAGTAGAACGAATGTTGTGGATGTGTAAACCAATACCACC 2774837 Query 66350 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 66409 || | || || || || || || ||||| || || || || || || ||| || Sbjct 2774838 AGCACTCTTGGAAATCAAGGCACAGGTCTTTAAAGTGTCGTAAATTCCGTCAATAGAGTC 2774897 Query 66410 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 66469 ||| ||||| | || ||||| ||||||||| || || || || || || Sbjct 2774898 GTCCTTCATGGCGACAAGGAAACAAGAAGACATTTGTGGAGATGGGGTACCAGCGTTGAA 2774957 Query 66470 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 66529 || || |||||| |||| || || | || || | | ||||| | ||||| | Sbjct 2774958 CAAAGTTGGAGAACCGTGAGTGAAGAAACGTTGGGACATCAAGTTGTAAGATTCAATGAC 2775017 Query 66530 TGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 66588 || ||||| || | || || || | | || | ||| | || || || |||| Sbjct 2775018 CTTCTCGATATCATCACCG-TGGATACCAATAGAAACTCTCATAATCAAATGTTGTGGTC 2775076 Query 66589 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 66648 ||||| | | ||| ||| | || | ||| ||| | || || || || ||||||| Sbjct 2775077 TTTCAGCAACCTTACCGTTGACACGTAAAAGGTATGATCTCTCTAAGGTCTTGAAACCAA 2775136 Query 66649 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 | ||||| || ||||| || ||||| | || ||||||| Sbjct 2775137 AGTAGTTATAATTGAAGTCACGATCGTAGACGATGGCCGAGTT 2775179 >seq1 Length=3488706 Score = 116 bits (128), Expect = 5e-21 Identities = 222/327 (68%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 65985 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 66044 ||||| ||||| || || ||||||| ||| ||| || || | | || ||||| Sbjct 3155159 AACTCTTCTCCGTAACAATCTGCCAATCCTGGAGCTTCGTCTGGGGAAAATAAGGACCAA 3155100 Query 66045 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAA 66104 || | | | || || | | ||| || | ||| |||||||| ||| | | ||| ||| Sbjct 3155099 TCCTCATTGTTTTTGACCCTCTCCATGAATAAATCCGGAATCCATAGACCAAAAAACAAA 3155040 Query 66105 TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 66164 |||| || || | ||||| || || ||||| || | ||| | || | | | Sbjct 3155039 TCTCGCGTCCTGAGCTCCTCTTTGCCGTGGTTCTTCTTCAAATCCAAGATTTCAAAGACG 3154980 Query 66165 TCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGA 66224 ||| ||||||| || || || ||||| || | | |||| || | |||||| ||||| ||| Sbjct 3154979 TCAGAATGCCATGGCTCTAAATATATAGCAAAAGCTCCTGGTCTTTTGTTCCCTCCTTGA 3154920 Query 66225 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 66284 || | |||||||| |||| |||| | ||| | | ||| || | | ||| ||| |||| Sbjct 3154919 TCCACATATCTAGCTGTGTCATTAAATACTTTAAGCATAGGCACCAACCCACTGGCTGTA 3154860 Query 66285 CCATTGGTCCCGGAGATATAGCTTCCA 66311 |||||||| | || |||| | |||| Sbjct 3154859 CCATTGGTACTGGCTATATGGGCTCCA 3154833 Score = 113 bits (124), Expect = 6e-20 Identities = 319/485 (66%), Gaps = 5/485 (1%) Strand=Plus/Minus Query 64857 GATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAA 64916 ||||| | || || || | ||||||||||| ||||| | || |||| ||||| Sbjct 3156320 GATGCAGCTTGTGTTCGCAAGTAGTACATTCCAGTTTTCAATCCCTTGTTCCAAGCGTAA 3156261 Query 64917 AAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 64976 ||||| |||||| || || | | | || | | || || ||||||||| || Sbjct 3156260 AAATGACAACTCGTAAGCTTTCCAAACGTTGGGTTTTGTAAGTGAATATTCATACTCTGC 3156201 Query 64977 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATT 65036 || || || || ||| || || || ||||| | | || |||||| | ||| Sbjct 3156200 AGCTGGTCAATAAACTTTCCTCTATCGGCCGCCATGTCGACAATGACCTTTTGCGAAATC 3156141 Query 65037 TCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-TAT--TCTGAAT 65092 ||||| | ||||||||| || || ||| || || | ||| | |||| ||| ||||||| Sbjct 3156140 TCCCACACAGTTTTATACAAGTC-CTTTATCTCCTGTGGGATATTTGGTATGCTCTGAAT 3156082 Query 65093 GGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGT 65152 ||||||| || |||||| | ||| | ||| || ||||||| | ||| | Sbjct 3156081 GGATCCATTTTCAAGAATAATCTTGTTCCTCATCGCAGACGTCCATAAACCTAAGTCGAT 3156022 Query 65153 TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 65212 |||| | | | || | | ||| |||| || || |||||||| | ||||| | || Sbjct 3156021 TAAATCCTTCAATAGGTACTTATTTACTATCTGGAACTCTCCAGAAAGCACTCTTCTTGT 3155962 Query 65213 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 65272 || | ||| |||||||| || | | |||||| || | ||| || | ||| || Sbjct 3155961 ATATAAATTGGAAGTATACGGCTCAAAGCATTCATTAAAGCCGAGAATCTGTGAAGTCGA 3155902 Query 65273 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 65332 |||||| ||||| |||||||| || || ||||| || || | | | ||| || || Sbjct 3155901 TGCAGTAGGCATCGGTGCCACTAACAAGGAGTTTCTGAGGCCATGTACTTTGACTTGATT 3155842 Query 65333 TTTTA 65337 |||| Sbjct 3155841 CTTTA 3155837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172717728400