Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 181 2e-40 seq6 140 7e-28 seq8 122 2e-22 >seq2 Length=3116340 Score = 181 bits (200), Expect = 2e-40 Identities = 300/427 (70%), Gaps = 17/427 (4%) Strand=Plus/Minus Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 ||||||||| || ||||| || | || ||||| |||| | || || || || || || Sbjct 2726850 TGATGGTATTGTCAACGAGAACTTGGTTGAGAACTTCTCTGCTGAAGTCCAAATCCCAGA 2726791 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 ||||| ||||| ||||| ||||| || || ||||| ||||| || |||| ||| Sbjct 2726790 AGCCAAGTGTTTCTACGGTTTCCAAATTATGATGGAAAACATTCACTCTGAGACATACTC 2726731 Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAA--GACTA--TTTTCTT 269051 | ||||||| || ||||| | ||| || ||| || |||| ||||| Sbjct 2726730 TTTATTAATTGACACTTACGT------TAAGGACCCTAAGGAAGCCGACTTCCTTTTCAA 2726677 Query 269052 CT--AT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAA 269108 | || || ||| | | ||| | ||||| || |||| ||||| ||| |||||| Sbjct 2726676 CGCCATCGACAACATTCCA-TGTATCAGAAAGAAGGCTGACTGGGCCTTGAGATGGATCT 2726618 Query 269109 ---ACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATAT 269165 ||||| || | ||| || || ||||| ||||| || ||||| || ||||| | Sbjct 2726617 CTGACGATGAAGCCTTGTTCGGTGAGAGATTAGTAGCTTTCGCTGCTGTTGAGGGTATCT 2726558 Query 269166 TCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGAT 269225 | || || || || || ||||||| ||||||||||| ||||| | |||||||| | Sbjct 2726557 TTTTCAGTGGATCCTTCGCTTCTATCTTCTGGTTGAAGAAGAGAGGTTTAATGCCAGGTT 2726498 Query 269226 TAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTT 269285 | |||||||| ||||||||||| | || ||||||||||||||| ||||||||| |||| Sbjct 2726497 TGACTTTCTCCAACGAATTGATCTGTAGAGACGAAGGTTTACACACCGACTTCGCCTGTT 2726438 Query 269286 TATTATT 269292 | || || Sbjct 2726437 TGTTGTT 2726431 >seq6 Length=1682205 Score = 140 bits (154), Expect = 7e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| ||||| || || |||||||| ||||||||||||||||| | || Sbjct 47318 TGCAAGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAACTGC 47259 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || | || ||||| ||||| || || ||||| || ||||||||||| Sbjct 47258 TTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGAATCTTG 47199 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | ||| ||| | || || || | ||||| ||||||||||| Sbjct 47198 GACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTACCAGTT 47139 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || ||||||||| Sbjct 47138 AAAGTCTTGACGAAAATTTGCATTTTG 47112 >seq8 Length=506948 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || ||||| || ||||||||||||||||| | ||| || ||| Sbjct 221938 GTGGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTACCGTCTTCCAATTGCTTACCA 221879 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || |||| | ||||| || || || || ||||| || || || ||||| | || Sbjct 221878 GCGAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTG 221819 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || ||| || || || ||||||||||||||||| | || Sbjct 221818 ACGTTGTCAATGGTGTCAGAAGATTCGACTTCAAGAGTAATAGTCTTACCAGTCAAAGTC 221759 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 221758 TTGACGAAAATTTGCAT 221742 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | ||| | || | || ||||| || || || || |||||| Sbjct 222199 ATACCACCTCTCAATCTTAATACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 222140 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| |||||||| | ||| || |||||||| || | || ||||| || || Sbjct 222139 GATAAGGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGT 222080 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| | || || || || | ||| || || ||| Sbjct 222079 GGAATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCA 222020 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||||||||||||||| | || || || || || ||||| Sbjct 222019 ACTTCAAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 221970 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || ||||| || ||||||||||||||||| | ||| || ||| Sbjct 221710 GTGGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTACCGTCTTCCAATTGCTTACCA 221651 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || |||| | ||||| || || || || ||||| ||||| || ||||| | || Sbjct 221650 GCGAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTATCTTGGATCTTGGACTTG 221591 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || ||| || || | ||||| |||||||| || | ||| Sbjct 221590 ACGTTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTACCGGTCAATGTC 221531 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || || ||||| || Sbjct 221530 TTAACGAAGATTTGCATGTT 221511 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || |||||||||| ||||| |||||||||| ||| || || Sbjct 222394 GTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTGCCGTCTTCTAATTGCTTACCG 222335 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | || ||||| || || || || ||||| || || || ||||| | || Sbjct 222334 GCGAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTA 222275 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || || || || ||||||||||||||||| | || Sbjct 222274 ACGTTGTCAATAGTGTCAGAGGACTCGACTTCAAGAGTAATAGTCTTACCAGTCAAGGTC 222215 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 222214 TTGACGAAAATTTGCAT 222198 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || |||||||| ||||||||||||||||| | ||| || ||| Sbjct 222622 GTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTGCTTACCA 222563 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || ||||| || || || || ||||| || || || ||||| | || Sbjct 222562 GCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTA 222503 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || || || || || ||||||||||| || | || Sbjct 222502 ACGTTGTCAATAGTGTCAGAGGACTCAACTTCGAGGGTGATAGTCTTACCGGTCAAAGTC 222443 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 222442 TTGACGAAAATTTGCAT 222426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398252477080