Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03-
24] 10 sequences; 17,147,083 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2 181 2e-40
seq6 140 7e-28
seq8 122 2e-22
>seq2
Length=3116340
Score = 181 bits (200), Expect = 2e-40
Identities = 300/427 (70%), Gaps = 17/427 (4%)
Strand=Plus/Minus
Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935
||||||||| || ||||| || | || ||||| |||| | || || || || || ||
Sbjct 2726850 TGATGGTATTGTCAACGAGAACTTGGTTGAGAACTTCTCTGCTGAAGTCCAAATCCCAGA 2726791
Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995
||||| ||||| ||||| ||||| || || ||||| ||||| || |||| |||
Sbjct 2726790 AGCCAAGTGTTTCTACGGTTTCCAAATTATGATGGAAAACATTCACTCTGAGACATACTC 2726731
Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAA--GACTA--TTTTCTT 269051
| ||||||| || ||||| | ||| || ||| || |||| |||||
Sbjct 2726730 TTTATTAATTGACACTTACGT------TAAGGACCCTAAGGAAGCCGACTTCCTTTTCAA 2726677
Query 269052 CT--AT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAA 269108
| || || ||| | | ||| | ||||| || |||| ||||| ||| ||||||
Sbjct 2726676 CGCCATCGACAACATTCCA-TGTATCAGAAAGAAGGCTGACTGGGCCTTGAGATGGATCT 2726618
Query 269109 ---ACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATAT 269165
||||| || | ||| || || ||||| ||||| || ||||| || ||||| |
Sbjct 2726617 CTGACGATGAAGCCTTGTTCGGTGAGAGATTAGTAGCTTTCGCTGCTGTTGAGGGTATCT 2726558
Query 269166 TCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGAT 269225
| || || || || || ||||||| ||||||||||| ||||| | |||||||| |
Sbjct 2726557 TTTTCAGTGGATCCTTCGCTTCTATCTTCTGGTTGAAGAAGAGAGGTTTAATGCCAGGTT 2726498
Query 269226 TAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTT 269285
| |||||||| ||||||||||| | || ||||||||||||||| ||||||||| ||||
Sbjct 2726497 TGACTTTCTCCAACGAATTGATCTGTAGAGACGAAGGTTTACACACCGACTTCGCCTGTT 2726438
Query 269286 TATTATT 269292
| || ||
Sbjct 2726437 TGTTGTT 2726431
>seq6
Length=1682205
Score = 140 bits (154), Expect = 7e-28
Identities = 155/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|| || || ||||| ||||| || || |||||||| ||||||||||||||||| | ||
Sbjct 47318 TGCAAGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAACTGC 47259
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||| || || | || ||||| ||||| || || ||||| || |||||||||||
Sbjct 47258 TTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGAATCTTG 47199
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
| || ||||| || | ||| ||| | || || || | ||||| |||||||||||
Sbjct 47198 GACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTACCAGTT 47139
Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563
| || || || || || |||||||||
Sbjct 47138 AAAGTCTTGACGAAAATTTGCATTTTG 47112
>seq8
Length=506948
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| || || || || ||||| || ||||||||||||||||| | ||| || |||
Sbjct 221938 GTGGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTACCGTCTTCCAATTGCTTACCA 221879
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || |||| | ||||| || || || || ||||| || || || ||||| | ||
Sbjct 221878 GCGAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTG 221819
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||| || || ||| || || || ||||||||||||||||| | ||
Sbjct 221818 ACGTTGTCAATGGTGTCAGAAGATTCGACTTCAAGAGTAATAGTCTTACCAGTCAAAGTC 221759
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 221758 TTGACGAAAATTTGCAT 221742
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | ||| | || | || ||||| || || || || ||||||
Sbjct 222199 ATACCACCTCTCAATCTTAATACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 222140
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| ||||| |||||||| | ||| || |||||||| || | || ||||| || ||
Sbjct 222139 GATAAGGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGT 222080
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || || ||||| | || || || || | ||| || || |||
Sbjct 222079 GGAATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCA 222020
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || ||||||||||||||||| | || || || || || |||||
Sbjct 222019 ACTTCAAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 221970
Score = 113 bits (124), Expect = 1e-19
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| || || || || ||||| || ||||||||||||||||| | ||| || |||
Sbjct 221710 GTGGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTACCGTCTTCCAATTGCTTACCA 221651
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || |||| | ||||| || || || || ||||| ||||| || ||||| | ||
Sbjct 221650 GCGAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTATCTTGGATCTTGGACTTG 221591
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || || || ||| || || | ||||| |||||||| || | |||
Sbjct 221590 ACGTTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAATGGTCTTACCGGTCAATGTC 221531
Query 104543 TTTACAAATATCTGCATTTT 104562
|| || || || ||||| ||
Sbjct 221530 TTAACGAAGATTTGCATGTT 221511
Score = 107 bits (118), Expect = 4e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| || || || || |||||||||| ||||| |||||||||| ||| || ||
Sbjct 222394 GTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTGCCGTCTTCTAATTGCTTACCG 222335
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| | || ||||| || || || || ||||| || || || ||||| | ||
Sbjct 222334 GCGAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTA 222275
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || || | || || || || ||||||||||||||||| | ||
Sbjct 222274 ACGTTGTCAATAGTGTCAGAGGACTCGACTTCAAGAGTAATAGTCTTACCAGTCAAGGTC 222215
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 222214 TTGACGAAAATTTGCAT 222198
Score = 107 bits (118), Expect = 4e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| || || || || |||||||| ||||||||||||||||| | ||| || |||
Sbjct 222622 GTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTGCTTACCA 222563
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | || ||||| || || || || ||||| || || || ||||| | ||
Sbjct 222562 GCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTA 222503
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || || | || || || || || ||||||||||| || | ||
Sbjct 222502 ACGTTGTCAATAGTGTCAGAGGACTCAACTTCGAGGGTGATAGTCTTACCGGTCAAAGTC 222443
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 222442 TTGACGAAAATTTGCAT 222426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151398252477080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |