Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 215 6e-51 seq1 113 6e-20 >seq2 Length=3116340 Score = 215 bits (238), Expect = 6e-51 Identities = 593/891 (67%), Gaps = 32/891 (4%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 |||||||| |||| || | || ||||| || ||||| || || | || || || || Sbjct 2726149 TTTTGGTAGTCACTGACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCTAAGGAGATGTTC 2726208 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 |||||||| || || || ||||| || || || | || || ||||| || |||| Sbjct 2726209 TCCATGAAGTCGAATGGGTTGGTGACGTTGTAGACCTTCTTGTTGCCCAA---AGCAATC 2726265 Query 33133 AAT---CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA-T 33188 ||| || || || ||||| || | ||| ||||| ||| |||||||||| | Sbjct 2726266 AATAATCTGTCGGCAACGAACTCGACGTATTGACACATCAATTCGGCGTTCATTCCTAAT 2726325 Query 33189 AAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 33248 ||| |||||| | ||| |||| | |||||||| || || || || || || || Sbjct 2726326 AAGGA-AACTGGCAAAGCATCAGTGAAGAATTCTTGCTCGATCTTGACAGCTTCAGTAAT 2726384 Query 33249 AATAGATCT-AACGGTTTCT---TCAC-TCGGTGGATGCAATAAATGTTTAAACATCAAA 33303 || ||| ||| | || || || || ||||| || |||| |||| Sbjct 2726385 GATCT-TCTCAACAATAACTGGGTCTGGTCTGTTT-TGCAAG---TGAGAGAACAACAAA 2726439 Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| ||| | ||| |||||||||| || | ||||||||| || || | Sbjct 2726440 CAGGCGAAGTCGGTGTGTAAACCTTCGTCTCTACAGATCAATTCGTTGGAGAAAGTCAAA 2726499 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||||| || | ||| || | ||| || || |||||||| |||||| || ||| Sbjct 2726500 CCTGGCATTAAACCTCTCTTCTTCAACCAGAAGATAGAAGCGAAGGATCCACTGAAAAAG 2726559 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-----GTCAT 33478 || || || || ||||| || || | | |||||| || ||| | ||| |||| Sbjct 2726560 ATACCCTCAACAGCAGCGAAAGCTACTAATCTCTCACCG-AACAAG-GCTTCATCGTCAG 2726617 Query 33479 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||||| | ||||| || ||||||||| | | ||| || || | || ||||| | Sbjct 2726618 AGATCCATCTCAAGGCCCAGTCAGCCTTCTTTCTGATACATGGAATGTTGTCGATGGCGT 2726677 Query 33539 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAA--AAGACTATA 33596 | || || ||| ||| ||| || ||||| ||||| || || || |||| ||| Sbjct 2726678 TGAAAAGGAAGTCGGCTTCCTTAGGGTCCTTAACGTAAGTGTCAATTAATAAAGAGTATG 2726737 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 | || || ||||||||||| || || || || ||||||||||| | || || | Sbjct 2726738 --TCTCAGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTGGCTTCTGG 2726795 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 || || ||||| | | | || || |||| || || || || || || ||| ||| Sbjct 2726796 GATTTGGACTTCAGCAGAGAAGTTCTCAACCAAGTTCTCGTTGACAATACCATCAGAGGC 2726855 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGTGTTAGT--TTATT 33773 || || || ||||| | | | || || ||| ||||| ||| || | | | || Sbjct 2726856 GGCGAAGAAAGCCAAGATACGGGAAATGAAGTATCTTTCGTTCTTGTTCAACTTGTGGTT 2726915 Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833 ||| ||| || |||| ||| | || | |||||| | ||||| || || || || || Sbjct 2726916 CCAGTCAGTGGTATCCTTACTCAAGTCGATTTCTTCGGCGGTCCAGAAGGAGGCTTCAGC 2726975 Query 33834 CTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 ||| || ||||| | ||||| |||| || | ||||||||| | ||| || Sbjct 2726976 CTTCTTGTACATTTGCCAGACTTCATGGTACTTGATTGGGAAGAGAACGAA 2727026 Score = 188 bits (208), Expect = 9e-43 Identities = 572/881 (65%), Gaps = 2/881 (0%) Strand=Plus/Plus Query 62968 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63027 ||||||| | || || || | ||| || |||| |||||||| || ||||| || | | Sbjct 2774300 ACTTGATTATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTACAGGCGTCCTTGTACAACA 2774359 Query 63028 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63087 |||| |||||||| || ||| |||| | || | ||| || | ||| | | | |||| Sbjct 2774360 TGAAAGGAGTACCGGTCTCAGTCTGGGCCTCCAAAATGGCGTACCACAACTTTTGGGCCT 2774419 Query 63088 TTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGT 63147 | | | | | ||| | |||||| ||||| || ||||| |||||| |||| Sbjct 2774420 TGACAGTGTTTCTTCCTCTACCTTCTCTCTCGTAACGTTCGTACAACTCTTCGAATTCGT 2774479 Query 63148 CTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63207 | || | || | ||| || ||| ||| | ||| | | | | ||| || |||| Sbjct 2774480 CACCGTATACTTCTGGCAAGCCTGGAGCTTCGTTTGGAGAGAAAAGAGTCCAATCACCGT 2774539 Query 63208 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 63267 | | |||| ||||| || | || |||||||| | |||| || | |||||| | Sbjct 2774540 TTTGTTCGACTCTCTTCATGAACAAGTCTGGAATCCACAAAGCTGGGAACAAATCTCTAG 2774599 Query 63268 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63327 |||| || || || || |||||| | | ||| | ||| | | ||| || | | Sbjct 2774600 CTCTAATCTCTTCCTTACCGTGGTTCTTTCTGATATCAATGAAGTCGAAAATGTCTGCGT 2774659 Query 63328 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63387 |||| ||||||||||||| ||| | | | || || || ||||| || || || || | || Sbjct 2774660 GCCATGGTTCCAAGTATAAGGCAAAAGCACCTGGACGCTTGTTACCACCTTGGTCAACGT 2774719 Query 63388 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63447 ||||||| || ||||| | || | | ||||||||| |||||||| ||| |||| || | Sbjct 2774720 ATCTAGCAGTATTATTGAAGACACGAACCATTGGAATGATACCGTTGGATGTACCGTTAG 2774779 Query 63448 TACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTG 63507 |||| | || ||| ||| | | |||||| || || || ||| || || || | Sbjct 2774780 TACCAGCAATGTAGGCACCAGTAGAACGAATGTTGTGGATGTGTAAACCAATACCACCAG 2774839 Query 63508 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCAT 63567 | | || || || || || || ||||| ||||| || || || || || || | Sbjct 2774840 CACTCTTGGAAATCAAGGCACAGGTCTTTAAAGTGTCGTAAATTCCGTCAATAGAGTCGT 2774899 Query 63568 CGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 63627 | ||||| | || ||||| ||||||||| || || || || || || | Sbjct 2774900 CCTTCATGGCGACAAGGAAACAAGAAGACATTTGTGGAGATGGGGTACCAGCGTTGAACA 2774959 Query 63628 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63687 | || |||||| |||| || || | || || | | ||||| | ||||| | Sbjct 2774960 AAGTTGGAGAACCGTGAGTGAAGAAACGTTGGGACATCAAGTTGTAAGATTCAATGACCT 2775019 Query 63688 AGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63746 || ||||| || | || || || | | || | ||| | || || || |||||| Sbjct 2775020 TCTCGATATCATCACCG-TGGATACCAATAGAAACTCTCATAATCAAATGTTGTGGTCTT 2775078 Query 63747 TCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63806 ||| | | ||| ||| | || | ||| ||| | || || || || |||||||| Sbjct 2775079 TCAGCAACCTTACCGTTGACACGTAAAAGGTATGATCTCTCTAAGGTCTTGAAACCAAAG 2775138 Query 63807 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63847 ||||| || ||||| || ||||| | || ||||||| Sbjct 2775139 TAGTTATAATTGAAGTCACGATCGTAGACGATGGCCGAGTT 2775179 >seq1 Length=3488706 Score = 113 bits (124), Expect = 6e-20 Identities = 319/485 (66%), Gaps = 5/485 (1%) Strand=Plus/Minus Query 62013 GATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAA 62072 ||||| | || || || | ||||||||||| ||||| | || |||| ||||| Sbjct 3156320 GATGCAGCTTGTGTTCGCAAGTAGTACATTCCAGTTTTCAATCCCTTGTTCCAAGCGTAA 3156261 Query 62073 AAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 62132 ||||| |||||| || || | | | || | | || || ||||||||| || Sbjct 3156260 AAATGACAACTCGTAAGCTTTCCAAACGTTGGGTTTTGTAAGTGAATATTCATACTCTGC 3156201 Query 62133 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATT 62192 || || || || ||| || || || ||||| | | || |||||| | ||| Sbjct 3156200 AGCTGGTCAATAAACTTTCCTCTATCGGCCGCCATGTCGACAATGACCTTTTGCGAAATC 3156141 Query 62193 TCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-TAT--TCTGAAT 62248 ||||| | ||||||||| || || ||| || || | ||| | |||| ||| ||||||| Sbjct 3156140 TCCCACACAGTTTTATACAAGTC-CTTTATCTCCTGTGGGATATTTGGTATGCTCTGAAT 3156082 Query 62249 GGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGT 62308 ||||||| || |||||| | ||| | ||| || ||||||| | ||| | Sbjct 3156081 GGATCCATTTTCAAGAATAATCTTGTTCCTCATCGCAGACGTCCATAAACCTAAGTCGAT 3156022 Query 62309 TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 62368 |||| | | | || | | ||| |||| || || |||||||| | ||||| | || Sbjct 3156021 TAAATCCTTCAATAGGTACTTATTTACTATCTGGAACTCTCCAGAAAGCACTCTTCTTGT 3155962 Query 62369 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62428 || | ||| |||||||| || | | |||||| || | ||| || | ||| || Sbjct 3155961 ATATAAATTGGAAGTATACGGCTCAAAGCATTCATTAAAGCCGAGAATCTGTGAAGTCGA 3155902 Query 62429 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62488 |||||| ||||| |||||||| || || ||||| || || | | | ||| || || Sbjct 3155901 TGCAGTAGGCATCGGTGCCACTAACAAGGAGTTTCTGAGGCCATGTACTTTGACTTGATT 3155842 Query 62489 TTTTA 62493 |||| Sbjct 3155841 CTTTA 3155837 Score = 107 bits (118), Expect = 2e-18 Identities = 220/327 (67%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 63141 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 63200 ||||| ||||| || || ||||||| ||| ||| || || | | || ||||| Sbjct 3155159 AACTCTTCTCCGTAACAATCTGCCAATCCTGGAGCTTCGTCTGGGGAAAATAAGGACCAA 3155100 Query 63201 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 63260 || | | | || || | | ||| || | ||| |||||||| ||| | | ||| | | Sbjct 3155099 TCCTCATTGTTTTTGACCCTCTCCATGAATAAATCCGGAATCCATAGACCAAAAAACAAA 3155040 Query 63261 TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 63320 |||| || || | ||||| || || ||||| || | ||| | || | | | Sbjct 3155039 TCTCGCGTCCTGAGCTCCTCTTTGCCGTGGTTCTTCTTCAAATCCAAGATTTCAAAGACG 3154980 Query 63321 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGA 63380 ||||||||||| || || || ||||| || | | |||| || | |||||| ||||| ||| Sbjct 3154979 TCAGAATGCCATGGCTCTAAATATATAGCAAAAGCTCCTGGTCTTTTGTTCCCTCCTTGA 3154920 Query 63381 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATA 63440 || | |||||||| |||| |||| | ||| | | ||| || | | || | | | || Sbjct 3154919 TCCACATATCTAGCTGTGTCATTAAATACTTTAAGCATAGGCACCAACCCACTGGCTGTA 3154860 Query 63441 CCATTGGTACCGGAGATATAGCTTCCA 63467 |||||||||| || |||| | |||| Sbjct 3154859 CCATTGGTACTGGCTATATGGGCTCCA 3154833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947122131600