Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 174 4e-38 seq3 95.1 3e-14 seq1 86.0 2e-11 >seq2 Length=3116340 Score = 174 bits (192), Expect = 4e-38 Identities = 554/839 (66%), Gaps = 30/839 (4%) Strand=Plus/Minus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459 ||||| | |||| ||| ||||| | ||| |||| ||| | ||| |||| | || || Sbjct 2775128 AAGACCTTAGAGAGATCATACCTTTTACGTGTCAACGGTAAGGTTGCTGAAAGACCACAA 2775069 Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAA 363519 ||| || | ||| | ||| ||||||||||||| | ||| | || | |||||| Sbjct 2775068 CATTTGATTATGAGAGTTTCTATTGGTATCCACGGTGATGATATCGAGAAGGTCATTGAA 2775009 Query 363520 ACATATAAGCTTCTAAGTGCT--CGTGTATTCACGCACGCCACGCCAACAATGTACAATG 363577 | || || ||| | || | ||| | ||||| |||| | ||||| ||| ||| | Sbjct 2775008 TCTTACAA-CTTG-ATGTCCCAACGTTTCTTCACTCACGGTTCTCCAACTTTGTTCAACG 2774951 Query 363578 CTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCA 363637 |||| || | |||||| ||||||||||| || ||| | ||||||||||| || | Sbjct 2774950 CTGGTACCCCATCTCCACAAATGTCTTCTTGTTTCCTTGTCGCCATGAAGGACGACTCTA 2774891 Query 363638 TCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAA 363697 | || || || | ||||| | |||| ||||| | |||||||||| ||| || || | Sbjct 2774890 TTGACGGAATTTACGACACTTTAAAGACCTGTGCCTTGATTTCCAAGAGTGCTGGTGGTA 2774831 Query 363698 TTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGT---TACATTCGCGGCAC-AGG 363752 ||||| || |||||||| ||||| | || | || |||||| || || | Sbjct 2774830 TTGGTTTACACATCCACAACATTCGTTCTACTG----GTGCCTACATTGCTGGTACTAAC 2774775 Query 363753 GGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGT 363812 || | | || || || | |||| ||| ||||||| || | |||||||| || ||||| Sbjct 2774774 GGTACA-TCCAACGGTATCATTCCAATGGTTCGTGTCTTCAATAATACTGCTAGATACGT 2774716 Query 363813 CGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGC 363872 ||||| ||||| ||||| ||| || ||||| | || | || || || || Sbjct 2774715 TGACCAAGGTGGTAACAAGCGTCCAGGTGCTTTTGCCTTATACTTGGAACCATGGCACGC 2774656 Query 363873 CGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAA--AAGAGGAATTGCGTGC 363929 || ||||| || || |||| || | || || ||||| || ||||| ||| | || Sbjct 2774655 AGACATTTTCGACTTCATTGATATCAGAAAGAACCACGGTAAGGAAGAG--ATT-AGAGC 2774599 Query 363930 ACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCA-- 363987 | ||| ||||| || | ||| || | ||| || |||||| | || || | Sbjct 2774598 TAGAGATTTGTTCCCAGCTTTGTGGATTCCAGACTTGTTCATGAAGAGAGTCGAACAAAA 2774539 Query 363988 -GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC-GATGTATGGG 364045 ||| ||||| | || || | ||| ||||| |||||| ||| || || |||| | Sbjct 2774538 CGGT---GATTGGACTCTTTTCTCTCCAAACGAAGCTCCAGG-CTTGCCAGAAGTATACG 2774483 Query 364046 GTGACGACTATGTTGCTCTATACGAAAAGTATGA-ATCGGAGGGAAAGGCTCGTAAGACA 364104 ||||||| | | | | |||||| || || | | ||| | ||| | || || Sbjct 2774482 GTGACGAATTCGAAGAGTTGTACGAACGTTACGAGAGAGAAGGTAGAGG-AAGAAACACT 2774424 Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164 | || || ||| | |||| ||||| |||| | |||| |||||| || || || Sbjct 2774423 GTCAAGGCCCAAAAGTTGTGGTACGCCATTTTGGAGGCCCAGACTGAGACCGGTACTCCT 2774364 Query 364165 TATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 | ||||||||||| || | || ||| ||| ||||||| || || | |||| ||| Sbjct 2774363 TTCATGTTGTACAAGGACGCCTGTAACAAGAAGACCAACCAAAAGAACTTGGGTATAAT 2774305 >seq3 Length=2759450 Score = 95.1 bits (104), Expect = 3e-14 Identities = 250/371 (67%), Gaps = 18/371 (5%) Strand=Plus/Plus Query 111351 GGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGC-AAATGAACTTGC 111409 |||||| | | ||||| |||||||| || ||||| ||| |||| |||| | ||| Sbjct 1497853 GGAATTATGCACGAACTCTTGTGGTTTGTTGCTGGAAGCACAGATGCCAAATTA--TTG- 1497909 Query 111410 AGCAAAAAA--TGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTT 111467 || ||||| ||||||||| ||||| ||||| ||||| ||||| || | || |||| Sbjct 1497910 AGTGAAAAAGGTGTAAAAATCTGGGAAGGAAACGGATCTCGTGAATTCTTGGACA-AGTT 1497968 Query 111468 GGTCTTGTC-GACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCA 111526 || ||| | ||| |||||| ||| | ||||||||||| || || |||||| | || Sbjct 1497969 GGGATTGACTGACCGTAGAGAAGGCGATTTGGGACCAGTTTATGGCTTCCAATGGAGGCA 1498028 Query 111527 CTTTGGTGCAGACTACAAAACCATGCACGACTCATATGATTCACAGGGAACTGAT----- 111581 || || ||||| | | || || ||| || || || || || || ||| Sbjct 1498029 TTTCGGAGCAGA--ATATAAGGAT-TGTGACACAGATTAT--ACCGGTAAAGGATTCGAC 1498083 Query 111582 CAATTACAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATG 111641 || || ||| ||||||| | | | |||| |||||| | | | ||||||||| Sbjct 1498084 CAGTTGCAGGATGTCATCAAAAAGTTAAAGACAAACCCATACGATAGAAGAATTATTATG 1498143 Query 111642 AGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC 111701 || |||||||| || || | || ||||| | || ||||| ||| || | ||| Sbjct 1498144 TCAGCGTGGAACCCTCCTGATTTTGGCAAGATGGCCTTGCCTCCATGCCATGTTTTTTGC 1498203 Query 111702 CAGTTTTATGT 111712 || || || || Sbjct 1498204 CAATTCTACGT 1498214 >seq1 Length=3488706 Score = 86.0 bits (94), Expect = 2e-11 Identities = 200/298 (67%), Gaps = 8/298 (3%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||| || || || ||| ||||||| ||||| || || ||||| || ||| Sbjct 3155884 GCACCGATGCCTACTGCATCGACTTCACAGATTCTCGGCTTTAATGAATGCTTTGAGCCG 3155943 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | ||| |||| | ||| || | | || ||||| ||||| || | | |||| |||||| Sbjct 3155944 TATACTTCCAATTTATATACAAGAAGAGTGCTTTCTGGAGAGTTCCAGATAGTAAATAAG 3156003 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC-ATGAAGAACTATAT 364928 |||||| | |||||| | |||| || | | || | | || |||| |||| | || Sbjct 3156004 TACCTATTGAAGGATTTAATCGACTTAGGTTTAT-GGACGTCTGCGATGAGGAACAAGAT 3156062 Query 364929 CATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTAT 364988 || | ||||| || | |||| ||| ||| | ||| | || | ||| | Sbjct 3156063 TATTCTTGAAAATGGATCCATTCAGAGCATACCAAATATCCCACAGGAGATAAAGGACTT 3156122 Query 364989 TTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATT---GATATGGCGGCCGAT 365043 || ||||| || ||||| ||||| || || ||||| || |||||||||||| Sbjct 3156123 GTATAAAACTGTGTGGGAGATTTC---GCAAAAGGTCATTGTCGACATGGCGGCCGAT 3156177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353433007820