Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 214 2e-50 seq1 118 1e-21 >seq2 Length=3116340 Score = 214 bits (236), Expect = 2e-50 Identities = 592/893 (66%), Gaps = 36/893 (4%) Strand=Plus/Plus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 |||||||| |||| || | || ||||| || ||||| ||||| |||| || || || Sbjct 2726149 TTTTGGTAGTCACTGACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCTAAGGAGATGTTC 2726208 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 |||||||| |||||||| ||||| || || || | || || ||||| || |||| Sbjct 2726209 TCCATGAAGTCGAATGGGTTGGTGACGTTGTAGACCTTCTTGTTGCCCAA---AGCAATC 2726265 Query 32490 AAT---CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA-T 32545 ||| || || || || || || | ||| ||||| ||| |||||||||| | Sbjct 2726266 AATAATCTGTCGGCAACGAACTCGACGTATTGACACATCAATTCGGCGTTCATTCCTAAT 2726325 Query 32546 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 32605 ||| |||||| | ||| |||| | |||||||| || || ||| || || || || Sbjct 2726326 AAGGA-AACTGGCAAAGCATCAGTGAAGAATTCTTGCTCGATCTTGACAGCTTCAGTAAT 2726384 Query 32606 AATAGATCTTACTGTTTCTTCACTCGGTGGATACAAT-----AAATGTTTAAACATCAAA 32660 |||||| || | ||| ||| | | || || |||| |||| Sbjct 2726385 ----GATCTT-CTCAACAATAACTGGGTCTGGTCTGTTTTGCAAGTGAGAGAACAACAAA 2726439 Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| ||| ||||| ||| |||||||||| || ||||||||||| || || | Sbjct 2726440 CAGGCGAAGTCGGTGTGTAAACCTTCGTCTCTACAGATCAATTCGTTGGAGAAAGTCAAA 2726499 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||||| || | ||| || | ||| || || || || || |||||| || || Sbjct 2726500 CCTGGCATTAAACCTCTCTTCTTCAACCAGAAGATAGAAGCGAAGGATCCACTGAAAAAG 2726559 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-----GTCAT 32835 || || || || || || || || | | |||||| || ||| | ||| |||| Sbjct 2726560 ATACCCTCAACAGCAGCGAAAGCTACTAATCTCTCACC-GAACAAG-GCTTCATCGTCAG 2726617 Query 32836 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895 ||||| | ||||| || ||||||||| | | ||| || || | || || || | Sbjct 2726618 AGATCCATCTCAAGGCCCAGTCAGCCTTCTTTCTGATACATGGAATGTTGTCGATGGCGT 2726677 Query 32896 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATA 32953 | || || ||| ||| ||| || ||||| || || ||||| | ||||| ||| Sbjct 2726678 TGAAAAGGAAGTCGGCTTCCTTAGGGTCCTTAACGTAAGTGTCAATTAATAAAGAGTAT- 2726736 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 | || || ||||||||||| || ||||| || |||||||| || | || || | Sbjct 2726737 -GTCTCAGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTGGCTTCTGG 2726795 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTG 33071 || || ||||| | | | || ||||| | || || || || || || || ||| | Sbjct 2726796 GATTTGGACTTCAGCAGAGAA--GTTCTCAACCAAGTTCTCGTTGACAATACCATCAGAG 2726853 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGTGTTAGT--TTA 33128 || || || || ||||| | | | || || ||| ||||| ||| || | | | Sbjct 2726854 GCGGCGAAGAAAGCCAAGATACGGGAAATGAAGTATCTTTCGTTCTTGTTCAACTTGTGG 2726913 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 ||||| ||| || |||| ||| | || | |||||| | ||||| || || || || Sbjct 2726914 TTCCAGTCAGTGGTATCCTTACTCAAGTCGATTTCTTCGGCGGTCCAGAAGGAGGCTTCA 2726973 Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 ||||| || ||||| | ||||| ||||| || | ||||| || | ||| || Sbjct 2726974 GCCTTCTTGTACATTTGCCAGACTTCATGGTACTTGATTGGGAAGAGAACGAA 2727026 Score = 196 bits (216), Expect = 6e-45 Identities = 578/884 (65%), Gaps = 8/884 (1%) Strand=Plus/Plus Query 62823 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 62882 ||||||| | || || || | ||| || |||| |||||||| || ||||| || | | Sbjct 2774300 ACTTGATTATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTACAGGCGTCCTTGTACAACA 2774359 Query 62883 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 62942 |||| |||||||| || ||| |||| | || | ||| || | ||| | | | |||| Sbjct 2774360 TGAAAGGAGTACCGGTCTCAGTCTGGGCCTCCAAAATGGCGTACCACAACTTTTGGGCCT 2774419 Query 62943 TTATTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 63000 | | | ||| | |||| |||||| ||||| || ||||| |||||| || Sbjct 2774420 TGACAGTG--TTTCTTCCTCTACCTTCTCTCTCGTAACGTTCGTACAACTCTTCGAATTC 2774477 Query 63001 GTCTCCCCAAACAT-TGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTC 63059 ||| || | || | || | || || ||| ||| | ||| | | | | ||| || | Sbjct 2774478 GTCACCGTATACTTCTGGCAAG-CCTGGAGCTTCGTTTGGAGAGAAAAGAGTCCAATCAC 2774536 Query 63060 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63119 ||| | | |||| ||||| || | || |||||||| | |||| || | ||||| Sbjct 2774537 CGTTTTGTTCGACTCTCTTCATGAACAAGTCTGGAATCCACAAAGCTGGGAACAAATCTC 2774596 Query 63120 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63179 | | |||| || || || || |||||| | | ||| | ||| | | ||| || | Sbjct 2774597 TAGCTCTAATCTCTTCCTTACCGTGGTTCTTTCTGATATCAATGAAGTCGAAAATGTCTG 2774656 Query 63180 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63239 ||||| ||||||||||||| ||| | | | || || || ||||| || || || || | Sbjct 2774657 CGTGCCATGGTTCCAAGTATAAGGCAAAAGCACCTGGACGCTTGTTACCACCTTGGTCAA 2774716 Query 63240 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 63299 ||||||||| || ||||| | || | | ||||||||| ||||| ||||||||||| | Sbjct 2774717 CGTATCTAGCAGTATTATTGAAGACACGAACCATTGGAATGATACCGTTGGATGTACCGT 2774776 Query 63300 TGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCC 63359 | || || | || ||| ||| | | |||||| || || || ||| || || | Sbjct 2774777 TAGTACCAGCAATGTAGGCACCAGTAGAACGAATGTTGTGGATGTGTAAACCAATACCAC 2774836 Query 63360 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 63419 | || | || || || || || || ||||| || || || || || || ||| | Sbjct 2774837 CAGCACTCTTGGAAATCAAGGCACAGGTCTTTAAAGTGTCGTAAATTCCGTCAATAGAGT 2774896 Query 63420 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 63479 | ||| ||||| | || ||||| ||||||||| || || || || || | Sbjct 2774897 CGTCCTTCATGGCGACAAGGAAACAAGAAGACATTTGTGGAGATGGGGTACCAGCGTTGA 2774956 Query 63480 ATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63539 | || || |||||| ||||||| || | || || | | ||||| | ||||| Sbjct 2774957 ACAAAGTTGGAGAACCGTGAGTGAAGAAACGTTGGGACATCAAGTTGTAAGATTCAATGA 2775016 Query 63540 CTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 63598 | || ||||| || | || || || | | || | ||| | || || || ||| Sbjct 2775017 CCTTCTCGATATCATCACCG-TGGATACCAATAGAAACTCTCATAATCAAATGTTGTGGT 2775075 Query 63599 CTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 63658 |||||| | | ||| ||| | || | ||| ||| | || || || || |||||| Sbjct 2775076 CTTTCAGCAACCTTACCGTTGACACGTAAAAGGTATGATCTCTCTAAGGTCTTGAAACCA 2775135 Query 63659 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63702 || ||||| || ||||| || ||||| | || ||||||| Sbjct 2775136 AAGTAGTTATAATTGAAGTCACGATCGTAGACGATGGCCGAGTT 2775179 >seq1 Length=3488706 Score = 118 bits (130), Expect = 1e-21 Identities = 320/485 (66%), Gaps = 5/485 (1%) Strand=Plus/Minus Query 61868 GATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAA 61927 ||||| | || || || | ||||||||||| ||||| | || |||| ||||| Sbjct 3156320 GATGCAGCTTGTGTTCGCAAGTAGTACATTCCAGTTTTCAATCCCTTGTTCCAAGCGTAA 3156261 Query 61928 AAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 61987 ||||| |||||| || || | | | || | | || || ||||||||| || Sbjct 3156260 AAATGACAACTCGTAAGCTTTCCAAACGTTGGGTTTTGTAAGTGAATATTCATACTCTGC 3156201 Query 61988 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATT 62047 || || || || ||| || || || ||||| | | ||| |||||| | ||| Sbjct 3156200 AGCTGGTCAATAAACTTTCCTCTATCGGCCGCCATGTCGACAATGACCTTTTGCGAAATC 3156141 Query 62048 TCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-TAT--TCTGAAT 62103 ||||| | ||||||||| || || ||| || || | ||| | |||| ||| ||||||| Sbjct 3156140 TCCCACACAGTTTTATACAAGTC-CTTTATCTCCTGTGGGATATTTGGTATGCTCTGAAT 3156082 Query 62104 GGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGT 62163 ||||||| || |||||| | ||| | ||| || ||||||| | ||| | Sbjct 3156081 GGATCCATTTTCAAGAATAATCTTGTTCCTCATCGCAGACGTCCATAAACCTAAGTCGAT 3156022 Query 62164 TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 62223 |||| | | | || | | ||| |||| || || |||||||| | ||||| | || Sbjct 3156021 TAAATCCTTCAATAGGTACTTATTTACTATCTGGAACTCTCCAGAAAGCACTCTTCTTGT 3155962 Query 62224 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62283 || | ||| |||||||| || | | |||||| || | ||| || | ||| || Sbjct 3155961 ATATAAATTGGAAGTATACGGCTCAAAGCATTCATTAAAGCCGAGAATCTGTGAAGTCGA 3155902 Query 62284 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62343 |||||| ||||| |||||||| || || ||||| || || | | | ||| || || Sbjct 3155901 TGCAGTAGGCATCGGTGCCACTAACAAGGAGTTTCTGAGGCCATGTACTTTGACTTGATT 3155842 Query 62344 TTTTA 62348 |||| Sbjct 3155841 CTTTA 3155837 Score = 109 bits (120), Expect = 7e-19 Identities = 209/308 (68%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 62996 AACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCAC 63055 ||||| ||||| || || ||| ||| ||| ||| || || | | || ||||| Sbjct 3155159 AACTCTTCTCCGTAACAATCTGCCAATCCTGGAGCTTCGTCTGGGGAAAATAAGGACCAA 3155100 Query 63056 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 63115 || | | | || || | | ||| || | ||| |||||||| ||| | | ||| | | Sbjct 3155099 TCCTCATTGTTTTTGACCCTCTCCATGAATAAATCCGGAATCCATAGACCAAAAAACAAA 3155040 Query 63116 TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 63175 |||| || || | ||||| || || ||||| || | ||| | || | | | Sbjct 3155039 TCTCGCGTCCTGAGCTCCTCTTTGCCGTGGTTCTTCTTCAAATCCAAGATTTCAAAGACG 3154980 Query 63176 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGA 63235 ||||||||||| || || || ||||| || | | |||| || | |||||| ||||| ||| Sbjct 3154979 TCAGAATGCCATGGCTCTAAATATATAGCAAAAGCTCCTGGTCTTTTGTTCCCTCCTTGA 3154920 Query 63236 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 63295 || | |||||||| |||| |||| | ||| | | ||| || | | ||| ||| |||| Sbjct 3154919 TCCACATATCTAGCTGTGTCATTAAATACTTTAAGCATAGGCACCAACCCACTGGCTGTA 3154860 Query 63296 CCATTGGT 63303 |||||||| Sbjct 3154859 CCATTGGT 3154852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631920796000