Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6 111 4e-19 seq2 111 4e-19 seq8 102 2e-16 >seq6 Length=1682205 Score = 111 bits (122), Expect = 4e-19 Identities = 160/225 (71%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| | ||| | ||| | || || ||||| |||| ||||||||||| | ||| || || Sbjct 47331 TCTTAAGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACC 47272 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||| |||||| || |||||||| | | || ||||| || ||| ||||| Sbjct 47271 GTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 47212 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||||||||| ||| || || | |||||| | | || || ||||| || || Sbjct 47211 GTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 47152 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638 |||||||| || | ||| || || |||||||| |||||| || Sbjct 47151 GGTCTTACCAGTTAAAGTCTTGACGAAAATTTG---CATTTTGGC 47110 >seq2 Length=3116340 Score = 111 bits (122), Expect = 4e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 167767 GGCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTG 167826 |||||||||||| | ||||| || |||| ||| | || ||| |||||||| || Sbjct 2774343 GGCGTCCTTGTACAACATGAAAGGAGTACCGGTCTCAGTCTGGGCCTCCAAAATGGCGTA 2774402 Query 167827 CCAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATA 167886 ||| | | |||||| || || || |||| |||| |||||| | ||||| | || || Sbjct 2774403 CCACAACTTTTGGGCCTTGACAGTGTTTCTTCCTCTACCTTCTCTCTCGTAACGTTCGTA 2774462 Query 167887 GAGGTCTTCGAAATCCTTCCCGTAAATTTC-GTCAAGACCGGGAGCTTCCTTCGGACAAA 167945 | |||||||| || | ||||| | ||| | |||| || |||||||| || ||| | | Sbjct 2774463 CAACTCTTCGAATTCGTCACCGTATACTTCTGGCAAG-CCTGGAGCTTCGTTTGGAGAGA 2774521 Query 167946 AGAGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCA 168000 | ||| |||||| || | ||||| ||||||||||| | ||| | | |||| Sbjct 2774522 AAAGAGTCCAATCACCGTTTTGTTCGACTCTCTTCATGAACAAGTCTGGAATCCA 2774576 >seq8 Length=506948 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| || |||||||||| ||||||||||| || || || || ||||||| || Sbjct 222173 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTGCCGTCTTCCAATTG 222114 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || || ||||| | | || ||||| || ||| ||||| || || ||||| Sbjct 222113 CTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTT 222054 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| || | |||||| | | ||| || || | || || |||||||| || Sbjct 222053 GGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACTTCAAGAGTAATAGTCTTACCAGT 221994 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | ||| || || |||||||| Sbjct 221993 CAAAGTCTTGACGAAAATTTG 221973 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||| ||||| || |||||||||| ||||||||||| | ||| || || Sbjct 222641 TCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACC 222582 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||| ||||| || || ||||| | | || ||||| || ||| ||||| Sbjct 222581 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTT 222522 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| ||| || | ||||| | | || || || | ||||| Sbjct 222521 GTCTTGGATCTTGGACTTAACGTTGTCAATAGTGTCAGAGGACTCAACTTCGAGGGTGAT 222462 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || | ||| || || |||||||| Sbjct 222461 AGTCTTACCGGTCAAAGTCTTGACGAAAATTTG 222429 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| || |||||||||| ||||||||||| || || || || ||||| | || Sbjct 222401 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTGCCGTCTTCTAATTG 222342 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| |||||||| || | | || ||||| || ||| ||||| || || ||||| Sbjct 222341 CTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTT 222282 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| || | ||||| | | || || || | || || |||||||| || Sbjct 222281 GGACTTAACGTTGTCAATAGTGTCAGAGGACTCGACTTCAAGAGTAATAGTCTTACCAGT 222222 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | || || || |||||||| Sbjct 222221 CAAGGTCTTGACGAAAATTTG 222201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921448950670