Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq8 212 1e-49 seq6 165 2e-35 seq2 87.8 4e-12 >seq8 Length=506948 Score = 212 bits (234), Expect = 1e-49 Identities = 180/222 (81%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | |||||||||||| || ||||| || ||||| |||| |||||| Sbjct 221963 TCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGAGT 221904 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| |||||||| | |||||||||||||| ||||| || Sbjct 221903 TCTACCGTCTTCCAATTGCTTACCAGCGAAGATTAAACGTTGTTGGTCTGGTGGAATACC 221844 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||||||||| ||||||||||| ||| ||| |||||||| Sbjct 221843 TTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCGACTTCAAG 221784 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || |||||||| || ||||| | |||||| Sbjct 221783 AGTAATAGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 221742 Score = 194 bits (214), Expect = 4e-44 Identities = 176/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | |||||||||||| || ||||| || ||||| |||| |||||| Sbjct 221735 TCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGAGT 221676 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| |||||||| | |||||||||||||| ||||| || Sbjct 221675 TCTACCGTCTTCCAATTGCTTACCAGCGAAGATTAAACGTTGTTGGTCTGGTGGAATACC 221616 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || ||||| || || ||||||||| ||||| ||||| ||| ||| ||||| | Sbjct 221615 TTCCTTATCTTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCCAA 221556 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| || ||||| || || ||||| | |||||| Sbjct 221555 GGTAATGGTCTTACCGGTCAATGTCTTAACGAAGATTTGCAT 221514 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | |||||||||||| || ||||| || ||||| || | | || Sbjct 222191 TCTCAATCTTAATACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGT 222132 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| || ||||| | || |||||||||||| ||||| || Sbjct 222131 TCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACC 222072 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||||||||| ||||||||||| ||| ||| |||||||| Sbjct 222071 TTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACTTCAAG 222012 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || |||||||| || ||||| | |||||| Sbjct 222011 AGTAATAGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 221970 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | |||||||||||| || ||||| || ||||| || | |||||| Sbjct 222647 TCTCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGT 222588 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| || ||||| | || |||||||||||| ||||| || Sbjct 222587 TCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACC 222528 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||| ||||| ||||| ||||| || || ||||| || Sbjct 222527 TTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATAGTGTCAGAGGACTCAACTTCGAG 222468 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || |||||||| || ||||| | |||||| Sbjct 222467 GGTGATAGTCTTACCGGTCAAAGTCTTGACGAAAATTTGCAT 222426 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | |||||||||||| || ||||| || ||||| || | | || Sbjct 222419 TCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGT 222360 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| ||||| || | || |||||||||||| ||||| || Sbjct 222359 TCTGCCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTGGAATACC 222300 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||| ||||| ||||| ||||| || || |||||||| Sbjct 222299 TTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATAGTGTCAGAGGACTCGACTTCAAG 222240 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || ||||| || || ||||| | |||||| Sbjct 222239 AGTAATAGTCTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 222198 >seq6 Length=1682205 Score = 165 bits (182), Expect = 2e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | ||| | ||||| || || || || ||||| || | |||||| Sbjct 47337 TCTCAATCTTAAGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGT 47278 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | ||||||||| |||||||| | || ||||||||| || ||||| || Sbjct 47277 TCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACC 47218 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| ||||| || |||||| || ||||||||||| || || ||||| | Sbjct 47217 TTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAA 47158 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| ||||| || || ||||| || ||||| | |||||||| Sbjct 47157 GGTAATGGTCTTACCAGTTAAAGTCTTGACGAAAATTTGCATTT 47114 >seq2 Length=3116340 Score = 87.8 bits (96), Expect = 4e-12 Identities = 240/361 (66%), Gaps = 10/361 (3%) Strand=Plus/Minus Query 160514 TGGCACGTTGACATCTTTGACTTTGTCGATGCGAAAAAGCCCGGAGGTGATGACCTGATG 160573 ||||||| ||||| || ||||| | ||| | |||| | ||| | || ||| Sbjct 2774663 TGGCACGCAGACATTTTCGACTTCATTGATATCAGAAAGAACCACGGTAAGGAAGAGATT 2774604 Query 160574 AGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAA 160633 ||||| ||||| | ||| || | |||| | | || | |||||||||||||| || Sbjct 2774603 AGAGCTAGAGATTTGTTCCCAGCTTTGTGGATTCCAGACTTGTTCATGAAGAGAGTCGAA 2774544 Query 160634 GACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTG-ATGATGTTTA 160692 | || || ||||||| ||||||| ||| || ||||| || || |||| || || || Sbjct 2774543 CAAAACGGTGATTGGACTCTTTTCTCTCCAAACGAAGCTCCAGG-CTTGCCAGAAGTATA 2774485 Query 160693 TGGTTCCGAGTTCG-AGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGG 160751 ||| ||| |||| ||| | | || ||| | ||||| | ||| || |||| | ||| Sbjct 2774484 CGGTGACGAATTCGAAGAGT-TGTACGAACGTTACGAGAGAGAAGGTAGAGGAAGAAACA 2774426 Query 160752 TCGTGAAGGCCCAAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGC 160811 || ||||||||| | ||||| | ||| | | ||||| ||| |||| | Sbjct 2774425 CTGTCAAGGCCCAAAAGTTGTGGTACGCCATTTTGGAGGCCCAGACTGAGACCGGTACTC 2774366 Query 160812 CCTTTATCGCATACAAGGATGCCATCTGTCGC---AAGAGTAACCAGAAGAACTTTGGAA 160868 | || || |||||||| || |||| | |||| ||||| |||||||| || | Sbjct 2774365 CTTTCATGTTGTACAAGGACGC---CTGTAACAAGAAGACCAACCAAAAGAACTTGGGTA 2774309 Query 160869 T 160869 | Sbjct 2774308 T 2774308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481457847670