Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 196 5e-45 seq1 147 2e-30 >seq2 Length=3116340 Score = 196 bits (216), Expect = 5e-45 Identities = 567/865 (66%), Gaps = 7/865 (1%) Strand=Plus/Plus Query 18685 ACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAAT 18744 ||||| || || ||||| ||||| || || |||| || || ||||| || || ||| Sbjct 2726164 ACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCTAAGGAGATGTTCTCCATGAAGTCGAAT 2726223 Query 18745 GGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACA 18804 || || | || || || | || ||| || || | | | || ||| || || || Sbjct 2726224 GGGTTGGTGACGTTGTAGACCTTCTTGTTGCCCAAAGCAATCAATAATCTGTCGGCAACG 2726283 Query 18805 AATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCA 18864 || | | ||| ||||| || |||||||||| ||| ||| || | ||| Sbjct 2726284 AACTCGACGTATTGACACATCAATTCGGCGTTCATTCCTAATAAGGAAACTGGCAAAGCA 2726343 Query 18865 TCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCT 18924 || || | |||||||| || || || || || || | || || |||| || || Sbjct 2726344 TCAGTGAAGAATTCTTGCTCGATCTTGACAGCTTCAGTAATGATCTTCTCAACAATAACT 2726403 Query 18925 TCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCC 18984 | || || | | | || |||| |||||| || || || |||| || Sbjct 2726404 GGGTCTGGTCTGTTTTGCAAGTGAGAGAACAACAAACAGGCGAAGTCGGTGTGTAAACCT 2726463 Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 |||||||||| |||||||| || || || || ||||| ||||| | ||||| || || Sbjct 2726464 TCGTCTCTACAGATCAATTCGTTGGAGAAAGTCAAACCTGGCATTAAACCTCTCTTCTTC 2726523 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 |||||||| |||||||| || |||||| || || ||||| || || || || ||||| Sbjct 2726524 AACCAGAAGATAGAAGCGAAGGATCCACTGAAAAAGATACCCTCAACAGCAGCGAAAGCT 2726583 Query 19105 ACTAGTCTTTCTCCATAACTAG-CATCATTATTATGAATCCATTTCAGTGCCCAATCAGC 19163 |||| ||| || || ||| || | |||| | | |||||| ||| ||||| ||||| Sbjct 2726584 ACTAATCTCTCACCG-AACAAGGCTTCATCGTCAGAGATCCATCTCAAGGCCCAGTCAGC 2726642 Query 19164 CTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGC-TCATCTG 19222 ||||||| | | |||||| || | || || | || || || | | || || | | Sbjct 2726643 CTTCTTTCTGATACATGGAATGTTGTCGATGGCGTTGAAAAG-GAAGTCGGCTTCCTTAG 2726701 Query 19223 TATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAG 19282 || ||||| || | || || |||||| ||| | || || ||||| ||||| || Sbjct 2726702 GGTCCTTAACGTAAGTGTCAATTAATAAAGAGTATGTCTCAGAGTGAATGTTTTCCATCA 2726761 Query 19283 CCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTT 19342 || || || ||||| ||||| | ||||||| || || |||||| | | || | | Sbjct 2726762 TAATTTGGAAACCGTAGAAACACTTGGCTTCTGGGATTTGGACTTCAGCAGAGAAGTTCT 2726821 Query 19343 CGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAA 19402 | ||||| || || || || || |||||| || || || || || || | | | || Sbjct 2726822 CAACCAAGTTCTCGTTGACAATACCATCAGAGGCGGCGAAGAAAGCCAAGATACGGGAAA 2726881 Query 19403 TAAAATGTTTTTCATCTGAGGTTAA--TGT-ATTCCAATCATTAATATCTTTAGATAAAT 19459 | || | | |||| | | | || ||| ||||| ||| | |||| ||| || | Sbjct 2726882 TGAAGTATCTTTCGTTCTTGTTCAACTTGTGGTTCCAGTCAGTGGTATCCTTACTCAAGT 2726941 Query 19460 CTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCAC 19519 | | |||||| | ||||| || || || || || || || ||||| | ||| | ||| Sbjct 2726942 CGATTTCTTCGGCGGTCCAGAAGGAGGCTTCAGCCTTCTTGTACATTTGCCAGACTTCAT 2727001 Query 19520 GATATTGTATAGGAAATATAACAAA 19544 | || | || || || | ||| || Sbjct 2727002 GGTACTTGATTGGGAAGAGAACGAA 2727026 Score = 176 bits (194), Expect = 5e-39 Identities = 1136/1824 (62%), Gaps = 45/1824 (2%) Strand=Plus/Plus Query 47009 TTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCAT 47068 || ||||| ||| ||||||||||||||||| ||||| |||| || ||||||||||| Sbjct 2773338 TTGTGTTCTTAAGTAATACATACCAGTCTTCAAACCCTTCTTCCAACCGTAGAAATGCAT 2773397 Query 47069 ACTAGTTAATTTAGA-ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGAT 47127 | || | ||| || | ||| || | | || || || | ||| || ||| | Sbjct 2773398 AGAGGTAAGCTTACCCATTGTTGGGTCCTTGA-TGTGGATGTTCAAAGACTGTGACTGGT 2773456 Query 47128 CAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATA 47187 |||| || ||| |||| ||||| ||||| || | |||| | |||||| || ||||| | Sbjct 2773457 CAATGAAGGCAGCTCTGTCAGCAGCCATGTCAATAATATGCTTTTGTGAGATTTCCCAAA 2773516 Query 47188 CTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAGTATTT---TGAATAGATCCTC 47244 | || ||||| | |||| || ||||| | ||||| | || ||||| || Sbjct 2773517 CAGTCTTATATAAGGCCTTAAGCTCATCTGGAACATTAGGCAATGACTGGATAGAACCAT 2773576 Query 47245 Cgttttctataattttgttttttaattcat--ttg-----accaaagttttcgttcagtt 47297 ||| || || ||||| || | ||| || ||| |||| || || | Sbjct 2773577 TGTTAGAAATGATGTTGTTCTTCATGGCATCGTTCCAGATACCCAAGT---CGACCAAAT 2773633 Query 47298 aatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTA 47357 | | | ||| | || || ||||| |||||||| |||| | ||||| | Sbjct 2773634 CACGCA---ACAAG-TATGGGTTGACAATCTGAAATTCACCAGCCAACACTCTTCTAGAG 2773689 Query 47358 TATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGAT 47417 || || ||| ||| |||||||| | | |||| || || || || ||||| | |||||| Sbjct 2773690 TAGATGTTAGATGTGTATGGTTCAAAACATTCGTTGTTACCCAAGATTTGGGAAGTTGAG 2773749 Query 47418 GCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNN 47477 || || ||||| | || || || || |||||| | || | || | || Sbjct 2773750 GCAGTTGGCATTGGGGCGACCAACAAAGAATTTCTCAAACCGTGCTTAGCCAACTTCTGC 2773809 Query 47478 NNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGA 47537 | ||| ||||| | || | ||| | ||| || |||||||| | Sbjct 2773810 TTCAAGGAATCCCAGTCCCATAACTCAGTTGGCTTTCTGTCCCACAAGTCATATTGTAAC 2773869 Query 47538 ATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGT 47597 | ||||| ||||| || | || | | ||||| || | | ||| | | Sbjct 2773870 AATCCTTGGGAAGCTGGAGAGCCCTCGTAAGACTCGTAAGGGCCTTCTTCGGCAGCCAAT 2773929 Query 47598 TCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTC 47657 || | ||||| | |||| | ||| || |||||||| |||| ||||| | |||| Sbjct 2773930 TCGATAGAGGCTTCAACGGCACCGTGATAGATAGTTTCAAAGATTTGGATGTTCA-ATTC 2773988 Query 47658 -CTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTG 47716 || || ||| || || || || | || ||||| ||||| ||||| Sbjct 2773989 TCTAGCCTCTTGGGAGTCGAATGGTAATCTCAATGCCATGAAGGTATCAGCCAAACCTTG 2774048 Query 47717 AACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATA 47776 ||||| | | |||||||||| | | || ||||| ||||||||| || | ||| || Sbjct 2774049 GACACCCAAAGCAATTGGTCTGTTTCTCTTGTTAGATCTCTCAGCTTCCGGAACTGGGTA 2774108 Query 47777 TTTGTTTATATCTATAATTTTATTTA----------GANNNNNNNNNNNNNNNNNNACAA 47826 | |||| | || || || || || | || ||| Sbjct 2774109 GTAGTTTCTGTCAATGATCTTGTTCAAGTTACGAGTGACGGACTTGGTGACTTCGTGCAA 2774168 Query 47827 TTTCTCTTAATT-TATTAAAATCAAACTTGTTAT--TTATAA-CAAACCTATTAAGTGCT 47882 ||||| | || || | || | ||||| | | || | | |||| | | || Sbjct 2774169 CTTCTCAAAGTTGTACCACAA--AGACTTGCTGTCCTTCTCAGCAAAGGAAGGTAAAGCA 2774226 Query 47883 ATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCA 47942 || || || | ||||| ||||| || || | ||| || || | || |||||| | Sbjct 2774227 ATGGAGGCCAAGTTACAGACAGCAACTTCCTCTGGGGAAGAGTACTCTACGATTTCACAA 2774286 Query 47943 CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCG 48002 || | ||| | | ||||| ||||||| || | || || | |||||||| ||| Sbjct 2774287 CACAAGTTAGAAGACTTGATTATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTACAGGCG 2774346 Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062 |||||||| | ||| ||||| || || || || |||| | || | || | | ||| Sbjct 2774347 TCCTTGTACAACATGAAAGGAGTACCGGTCTCAGTCTGGGCCTCCAAAATGGCGTACCAC 2774406 Query 48063 ACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTAT--TTAGTATATA 48120 | | ||||| | | ||| || || || ||||| || ||| | Sbjct 2774407 AACTTTTGGGCCTTGACAGTGTTTCTTCCTCTACCTTCTCTCTCGTAACGTTCGTACA-- 2774464 Query 48121 ACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCA 48180 ||| || ||||| || || || || | || || ||| ||| || ||| | | | Sbjct 2774465 ACTCTTCGAATTCGTCACCGTATACTTCTGGCAAGCCTGGAGCTTCGTTTGGAGAGAAAA 2774524 Query 48181 ATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTA 48240 | |||||| | | | || ||||| |||| || | ||||| ||||| | |||| Sbjct 2774525 GAGTCCAATCACCGTTTTGTTCGACTCTCTTCATGAACAAGTCTGGAATCCACAAAGCTG 2774584 Query 48241 TAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGT 48300 || ||||| |||| ||| | ||||| || || ||| || | | |||| |||| Sbjct 2774585 GGAACAAATCTCTAGCTCTAATCTCTTCCTTACCGTGGTTCTTTCTGATATCAATGAAGT 2774644 Query 48301 CCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTAC 48360 | | || || || ||||||||||| || |||| || | ||||||| || || |||| Sbjct 2774645 CGAAAATGTCTGCGTGCCATGGTTCCAAGTATAAGGCAAAAGCACCTGGACGCTTGTTAC 2774704 Query 48361 CTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCAT 48420 | ||||| || | ||||| |||||||| || | || | | |||||| | ||||| | Sbjct 2774705 CACCTTGGTCAACGTATCTAGCAGTATTATTGAAGACACGAACCATTGGAATGATACCGT 2774764 Query 48421 TTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-TGAA 48479 | ||| |||| || || || | ||| || ||| ||| | || || || || | Sbjct 2774765 TGGATGTACCGTTAGTACCAGCAATGTAGGCACCAGTAGAACGAATGTTGTGGATGTGTA 2774824 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| |||||||| || | || || || | ||||| || | || || |||||| Sbjct 2774825 A-ACCAATACCACCAGCACTCTTGGAAATCAAGGCACAGGTCTTTAAAGTGTCGTAAATT 2774883 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAA 48599 || || ||| || || |||| | || |||||| ||||||||| ||| Sbjct 2774884 CCGTCAATAGAGTCGTCCTTCATGGCGACAAGGAAACAAGAAGACATTTGTGGAGATGGG 2774943 Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | || || || |||||||| | ||| | || | | || | ||| || Sbjct 2774944 GTACCAGCGTTGAACAAAGTTGGAGAACCGTGAGTGAAGAAACGTTGGGACATCAAGTTG 2775003 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || | |||||| || || ||||| || | || ||||| ||||| || | ||| | Sbjct 2775004 TAAGATTCAATGACCTTCTCGATATCATCACCG-TGGATACCAATAGAAACTCTCATAAT 2775062 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 || || ||| ||||||||| ||| || || | ||||| |||||| | || || Sbjct 2775063 CAAATGTTGTGGTCTTTCAGCAACCTTACCGTTGACACGTAAAAGGTATGATCTCTCTAA 2775122 Query 48779 TGTTTTAAAACCAAAATAGTTGTA 48802 || || |||||||| ||||| || Sbjct 2775123 GGTCTTGAAACCAAAGTAGTTATA 2775146 >seq1 Length=3488706 Score = 147 bits (162), Expect = 2e-30 Identities = 524/810 (65%), Gaps = 12/810 (1%) Strand=Plus/Minus Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 ||||| || || ||||| | |||| | || ||||||||| |||| || || | |||| Sbjct 3155294 TTACAAGCATCTTTGTATAACATATATGGCCCCCCAGTTTCTGTCTGGGACTCCAAGATA 3155235 Query 48054 GATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTA 48113 | | ||| | | ||| |||| || | |||| | || | |||||||| Sbjct 3155234 GCATGCCACAACTTTTGAGCTTTTACGACTTCATGAGCTCTTCCCTCTTTCTCGTATTTC 3155175 Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCCAGGACATTCATTAGG 48172 | |||| | |||| || || || || ||| | | | || || ||| ||| | || Sbjct 3155174 TTGTATAGTTCAACAAACTCTTCTCCGTA-ACAATCTGCCAATCCTGGAGCTTCGTCTGG 3155116 Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232 | | || ||||||||||||| ||||| || || ||| |||| ||| || ||||| Sbjct 3155115 GGAAAATAAGGACCAATCCTCATTGTTTTTGACCCTCTCCATGAATAAATCCGGAATCCA 3155056 Query 48233 AAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT-AAGTT 48291 ||| | | ||| ||||| | || || || || || ||||| ||| | || || | Sbjct 3155055 TAGACCAAAAAACAAATCTCGCGTCCTGAGCTCCTCTTTGCCGTGGTTCTTCTTCAAATC 3154996 Query 48292 CAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTC 48351 ||||| || | | |||| ||||||||| ||||||||||| || | | ||||||| Sbjct 3154995 CAAGATT-TCAAAGACGTCAGAATGCCATGGCTCTAAATATATAGCAAAAGCTCCTGGTC 3154937 Query 48352 GTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGA 48411 ||| || ||||||||||| | |||||| || || | ||| | ||| | | ||| || | Sbjct 3154936 TTTTGTTCCCTCCTTGATCCACATATCTAGCTGTGTCATTAAATACTTTAAGCATAGGCA 3154877 Query 48412 CAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT-A 48470 | | ||| | | | |||||||||| | | |||| |||| |||||||||| Sbjct 3154876 CCAACCCACTGGCTGTACCATTGGTACTGGCTATATGGGCTCCATGTCCTCTTATATTGT 3154817 Query 48471 CTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTA---AGG 48527 || || || || ||||| |||| || || |||| ||| |||| || Sbjct 3154816 GTACATGTAA-GCCAATACCCCCTGATGCCTTGGAAATTAAAGC---TGCTTTATGGAGC 3154761 Query 48528 GTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATT 48587 || | || ||||| || || || ||| ||| || | ||| || |||| Sbjct 3154760 GTCTTGTAGATTCCATCAATGGAGTCGTCTTCCATGGCTATCAAAAAGCACGACGACAAG 3154701 Query 48588 TGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCT 48647 | || || || | |||| | || || || ||||| || ||||| |||| | Sbjct 3154700 TAATTATATTCGGTACCAGCATTATACAAAGTGGGTGATGCGTGTATAAAGTATTTATTG 3154641 Query 48648 GATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGAT 48707 || | ||||| || ||||||| || || |||| | ||| ||||| |||| Sbjct 3154640 GACATCAATTCGTACGTTTCAACGACTTCTTCCATATTATCTCCATGGATACCAATAGCA 3154581 Query 48708 ACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATAT 48767 || | | ||||| |||||||| ||||| | | || || || ||||| | ||| Sbjct 3154580 ACTCTTAAGAACATGAATTGAGGTGTTTCAGCTACCTTTCCATCAATCTTCAACAAATAC 3154521 Query 48768 GATTTTTCCAATGTTTTAAAACCAAAATAG 48797 || || | || ||||||| ||||||||| Sbjct 3154520 GACTTCTGTAACGTTTTAATTCCAAAATAG 3154491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108729736400