Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 159 5e-34 seq8 143 4e-29 seq6 98.7 1e-15 >seq2 Length=3116340 Score = 159 bits (176), Expect = 5e-34 Identities = 560/859 (65%), Gaps = 30/859 (3%) Strand=Plus/Plus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 || |||| ||| || | |||| | ||||||||||| || ||||| || | || || || Sbjct 2726146 GCCTTTTGGTAGTCACTGACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCTAAGGAGATG 2726205 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATA-ATATTTTTCTTGTATTAATTCGTA 17979 | ||| || || ||||| || ||| || || | || || ||| || | Sbjct 2726206 TTCTCCATGAAGTCGAATGGGTTGGTGACGTTGTAGACCTTCTTGTTGCCCAAAGCAATC 2726265 Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 |||||||| || || || || ||||| ||||| ||||||| ||| ||||| |||| Sbjct 2726266 -AATAATCTGTCGGCAACGAACTCGACGTATTGACACATCAATTCGGCGTTCATTCCTAA 2726324 Query 18040 TAGTCTGAAA--GGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTT 18097 || |||| || | ||||||| | | ||||||| ||| |||| |||| || | Sbjct 2726325 TAAG--GAAACTGGCAAAGCATCAGTGAAGAATTCTTGCTCGATCTTGACAGCTTCAGTA 2726382 Query 18098 ATTATGTTTATTACCCTAGAT---TTTGGCAATTTATTAATTATGTGATTATAATATAAT 18154 || || || || || | | ||| | | || | |||| | | || Sbjct 2726383 ATGATCTTCTCAACAATAACTGGGTCTGG---TCTGTTTTGCAAGTGAG---AGAACAAC 2726436 Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| || || || |||||||||||||| ||||| | || |||||||| || || Sbjct 2726437 AAACAGGCGAAGTCGGTGTGTAAACCTTCGTCTCTACAGATCAATTCGTTGGAGAAAGTC 2726496 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGA---AACTACTAGAA 18271 || || ||||||| |||||| || || | ||| || || || |||| | | ||| ||| Sbjct 2726497 AAACCTGGCATTAAACCTCTCTTCTTCAACCAGAAGATAGAAGCGAAGGATCCACT-GAA 2726555 Query 18272 AAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT 18330 | || ||||||||||| ||| ||||| |||| |||||| ||| | || | || || Sbjct 2726556 A--AAGATACCCTCAACAGCA-GCGAAAGCTACTAATCTCTCACCGAACAAGGCTTCATC 2726612 Query 18331 GCTCAG-TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTA 18389 | |||| |||||| | ||||| || | | ||||| || || | || | Sbjct 2726613 G-TCAGAGATCCATCTCAAGGCCCAGTCAGCCTTCTTTCTGATACATGGAATGTTGTCGA 2726671 Query 18390 TAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAG 18449 | || || || | || ||| || | || || | |||||||| ||||| |||| Sbjct 2726672 TGGCGTTGAAAAGGAAGTCGGCTTCCTTAGGGTCCTTAACGTAAGTGTCAATTAATAAAG 2726731 Query 18450 AATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT 18509 | || | ||||| || ||| ||||||| || || |||| || || | | || | Sbjct 2726732 AGTATGTCTCAGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTGGCTT 2726791 Query 18510 C-GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 | ||||| ||| | || | | || | || ||||| ||||| || || ||||| ||| Sbjct 2726792 CTGGGAT-TTGGACTTCAGCAGAGAAGTTCTCAACCAAGTTCTCGTTGACAATACCATCA 2726850 Query 18569 GCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATT- 18627 | | ||||| || ||||| | | |||||| | | |||| || | || | || Sbjct 2726851 GAGGCGGCGAAGAAAGCCAAGATACGGGAAATGAAGTATCTTTCGTTCTTGTTCAACTTG 2726910 Query 18628 --GTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGAT 18685 |||||| ||| |||| || | || | |||||| | ||||| || || | | Sbjct 2726911 TGGTTCCAGTCAGTGGTATCCTTACTCAAGTCGATTTCTTCGGCGGTCCAGAAGGAGGCT 2726970 Query 18686 TCGGCCTGTTTGTACATTT 18704 || |||| |||||||||| Sbjct 2726971 TCAGCCTTCTTGTACATTT 2726989 >seq8 Length=506948 Score = 143 bits (158), Expect = 4e-29 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||||||| || |||||||| | |||||||| ||| Sbjct 222198 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAGACTATTACTCTTGAAGTCGAGTCCTCT 222257 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || || || ||||| || ||||| || || ||||| ||| Sbjct 222258 GACACTATTGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCAGACCAA 222317 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||||||||||| | ||||| |||||| ||||| || || | Sbjct 222318 CAAAGATTGATTTTCGCCGGTAAGCAATTAGAAGACGGCAGAACCTTATCTGACTACA-- 222375 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| || || |||||||| ||||| ||| Sbjct 222376 ACATCCAAAAGGAATCCACTCTTCACTTGGTTTTAAGATTGAGAGGTGGT 222425 Score = 140 bits (154), Expect = 5e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||||||| || |||||||| | ||||| ||| |||| Sbjct 221970 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTTGAAGTTGAATCTTCT 222029 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| || ||||| || || ||||| ||| Sbjct 222030 GACACCATTGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCAGACCAA 222089 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| |||||||| | ||||| |||||| ||||| || || | Sbjct 222090 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACCTTATCTGACTACA-- 222147 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| || || |||||||| ||||| ||| Sbjct 222148 ACATCCAAAAGGAATCCACTCTTCACTTGGTATTAAGATTGAGAGGTGGT 222197 Score = 113 bits (124), Expect = 7e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||| || || ||||| || | ||||| || ||| Sbjct 222426 ATGCAAATTTTCGTCAAGACTTTGACCGGTAAGACTATCACCCTCGAAGTTGAGTCCTCT 222485 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || || || ||||| || ||||| || || ||||| ||| Sbjct 222486 GACACTATTGACAACGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCAGACCAA 222545 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| |||||||| | ||||| |||||| | || || || | Sbjct 222546 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTTTCTGACTACA-- 222603 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| || || || ||||| ||||| ||| Sbjct 222604 ACATCCAAAAGGAATCCACTCTTCACTTGGTTTTGAGATTGAGAGGAGGT 222653 >seq6 Length=1682205 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | || || || ||||| || || ||||| || |||||||| Sbjct 47113 AAAATGCAAATTTTCGTCAAGACTTTAACTGGTAAGACCATTACCTTGGAAGTCGAGTCC 47172 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || || || || || || || ||||| || || || || Sbjct 47173 TCCGACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGTATTCCACCTGAC 47232 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | || ||||||||| | ||||| |||||| | || || || Sbjct 47233 CAACAAAGATTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACTCTTTCTGACTAC 47292 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || || || | || | || || || |||||||| ||||| |||| Sbjct 47293 AACATCCAGAAGGAATCCACCTTGCACTTGGTCTTAAGATTGAGAGGTGGTG 47344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871908516000