Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq8 136 8e-27 seq6 114 3e-20 seq2 107 4e-18 >seq8 Length=506948 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | |||||| || || | ||| | || || ||| || || ||| Sbjct 222199 ATACCACCTCTCAATCTTAATACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 222140 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| |||| | || |||||||| |||||||||||||| ||||| ||||| || ||| Sbjct 222139 GATAAGGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGT 222080 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || || | || || ||||| Sbjct 222079 GGAATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCA 222020 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| || |||||||| || || || | || || ||||| Sbjct 222019 ACTTCAAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 221970 Score = 123 bits (136), Expect = 5e-23 Identities = 171/238 (72%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | ||| || || || | ||| | || || ||| || || || Sbjct 221743 ATACCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCG 221684 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | || |||||||| |||||||| |||||||| | ||||| || ||| Sbjct 221683 GAAAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAGATTAAACGTTGTTGGTCTGGT 221624 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || || || |||| || || ||||| Sbjct 221623 GGAATACCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCA 221564 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT-TTTATTA 192543 ||||| | |||||||| ||||| || ||||| |||| || || ||||| ||||||| Sbjct 221563 ACTTCCAAGGTAATGGTCTTACCGGTCAATGTCTTAACGAAGATTTGCATGTTTATTA 221506 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | ||| || || || | ||| | || || ||| || || ||| Sbjct 222427 ATACCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 222368 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| |||| | || || ||||| ||||| || || || ||||| ||||| || ||| Sbjct 222367 GATAAGGTTCTGCCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGT 222308 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || |||| || || || || Sbjct 222307 GGAATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATAGTGTCAGAGGACTCG 222248 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| || |||||||| || || || | || || ||||| Sbjct 222247 ACTTCAAGAGTAATAGTCTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 222198 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | ||| || || || | ||| | || || ||| || || || Sbjct 221971 ATACCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCG 221912 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | || |||||||| |||||||| |||||||| | ||||| || ||| Sbjct 221911 GAAAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAGATTAAACGTTGTTGGTCTGGT 221852 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || || | || || ||||| Sbjct 221851 GGAATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCG 221792 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| || |||||||| || || || | || || ||||| Sbjct 221791 ACTTCAAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 221742 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || ||||| | |||| | || |||||||| |||||||||||||| ||||| Sbjct 222608 GATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCT 222549 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||| || ||||| || ||||| || ||||| || || || || || |||| Sbjct 222548 TTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATAGT 222489 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || || ||||| || || || || ||||| || || || || | || || || Sbjct 222488 GTCAGAGGACTCAACTTCGAGGGTGATAGTCTTACCGGTCAAAGTCTTGACGAAAATTTG 222429 Query 192534 CAT 192536 ||| Sbjct 222428 CAT 222426 >seq6 Length=1682205 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | ||| || || || || || | || || ||| || || ||||| Sbjct 47343 ACCACCTCTCAATCTTAAGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCAGA 47284 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| | || ||||| || |||||||| ||||| ||||| ||||| |||||||| Sbjct 47283 AAGAGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGG 47224 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || || || || || || ||||| || | || || || || || Sbjct 47223 AATACCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGAC 47164 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| | |||||||| ||||||||||| || || | || || |||||||| Sbjct 47163 TTCCAAGGTAATGGTCTTACCAGTTAAAGTCTTGACGAAAATTTGCATTTT 47113 >seq2 Length=3116340 Score = 107 bits (118), Expect = 4e-18 Identities = 279/422 (66%), Gaps = 9/422 (2%) Strand=Plus/Plus Query 49647 AATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAAT 49706 |||||||| ||||| || || || || ||||| |||| ||||| ||||| || ||| Sbjct 2726266 AATAATCTGTCGGCAACGAACTCGACGTATTGACACATCAATTCGGCGTTCATTCCTAAT 2726325 Query 49707 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 49766 || || ||| || |||||| | ||||||| || || | ||||||| |||| Sbjct 2726326 AAGGAAACTGGCAAAGCATCAGTGAAGAATTCTTGCTCGATCTTGACAGCTTCAGTAATG 2726385 Query 49767 atcataattatattattttttgataatttatatttaatatgattcgcatatattaaACAT 49826 ||| | | | || | | | | | || | ||| | | | ||||| Sbjct 2726386 ATCTTCTCAACAATAACTGGGTCTGGTCTGTTTTGCAAGTGA---GAGAACAACAAACAG 2726442 Query 49827 GCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 49886 || || || || |||||||| ||||| ||| | || ||||| || ||||| || ||| Sbjct 2726443 GCGAAGTCGGTGTGTAAACCTTCGTCTCTACAGATCAATTCGTTGGAGAAAGTCAAACCT 2726502 Query 49887 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTACTAGAAAAGAAT 49943 |||||||| |||||||| || | ||| || || || || | | | ||| |||| || Sbjct 2726503 GGCATTAAACCTCTCTTCTTCAACCAGAAGATAGAAGCGAAGGATCCACT-GAAA--AAG 2726559 Query 49944 ATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT 50003 |||||||| ||| || || |||| || ||| | || |||| || ||| || | Sbjct 2726560 ATACCCTCAACAGCAGCGAAAGCTACTAATCTCTCACCGAACAAGGCTTCATCGTCAGAG 2726619 Query 50004 ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 50063 ||||| | | ||||| || || || ||| ||||| | || || || || || || || Sbjct 2726620 ATCCATCTCAAGGCCCAGTCAGCCTTCTTTCTGATACATGGAATGTTGTCGATGGCGTTG 2726679 Query 50064 AA 50065 || Sbjct 2726680 AA 2726681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479873863500