Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq8 141 2e-28 seq6 125 1e-23 seq2 122 2e-22 >seq8 Length=506948 Score = 141 bits (156), Expect = 2e-28 Identities = 176/240 (73%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| || || || | ||| | || || || || || || Sbjct 221743 ATACCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCG 221684 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| |||||||| |||||||| || ||||| | |||||||| ||| Sbjct 221683 GAAAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAGATTAAACGTTGTTGGTCTGGT 221624 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || || || || ||||| || || ||||| Sbjct 221623 GGAATACCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCA 221564 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT-TTTATTATA 172078 ||||| | |||||||| ||||| || ||||| |||| ||| || ||||| ||||||||| Sbjct 221563 ACTTCCAAGGTAATGGTCTTACCGGTCAATGTCTTAACGAAGATTTGCATGTTTATTATA 221504 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || |||||| || || | ||| | || || || || || || Sbjct 222199 ATACCACCTCTCAATCTTAATACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 222140 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || |||| |||||||| ||||||||||| || ||||| |||||||| ||| Sbjct 222139 GATAAGGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGT 222080 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || || || || || ||||| Sbjct 222079 GGAATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCA 222020 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||| || |||||||| || || || | ||| || ||||| Sbjct 222019 ACTTCAAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 221970 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| || || || | ||| | || || || || || || Sbjct 222427 ATACCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 222368 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || |||| || ||||| ||||| || ||||| ||||| |||||||| ||| Sbjct 222367 GATAAGGTTCTGCCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGT 222308 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || ||||| || || || || Sbjct 222307 GGAATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATAGTGTCAGAGGACTCG 222248 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||| || |||||||| || || || | ||| || ||||| Sbjct 222247 ACTTCAAGAGTAATAGTCTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 222198 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| || || || | ||| | || || || || || || Sbjct 221971 ATACCACCTCTCAATCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCG 221912 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| |||||||| |||||||| || ||||| | |||||||| ||| Sbjct 221911 GAAAGAGTTCTACCGTCTTCCAATTGCTTACCAGCGAAGATTAAACGTTGTTGGTCTGGT 221852 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || || || || || ||||| Sbjct 221851 GGAATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCG 221792 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||| || |||||||| || || || | ||| || ||||| Sbjct 221791 ACTTCAAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 221742 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| | || || || || || | ||| | || || || || || || || Sbjct 222653 ACCTCCTCTCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGA 222594 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || |||| |||||||| ||||||||||| || ||||| |||||||| ||||| Sbjct 222593 AAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGG 222534 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| || || || || || ||||| || || || || || Sbjct 222533 AATACCTTCCTTGTCTTGGATCTTGGACTTAACGTTGTCAATAGTGTCAGAGGACTCAAC 222474 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| || || || || ||||| || || || || | ||| || ||||| Sbjct 222473 TTCGAGGGTGATAGTCTTACCGGTCAAAGTCTTGACGAAAATTTGCAT 222426 >seq6 Length=1682205 Score = 125 bits (138), Expect = 1e-23 Identities = 176/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 171826 TTTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAG 171885 ||||| ||| || ||||||||| | || ||| || || || || || | || || Sbjct 47359 TTTTTCTCTTCTTACCACCACCTCTCAATCTTAAGACCAAGTGCAAGGTGGATTCCTTCT 47300 Query 171886 AAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATC 171945 || || || || || | || || |||| ||||| || |||||||| || || |||| Sbjct 47299 GGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAATC 47240 Query 171946 TCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 172005 | |||||||||||||| || ||||| || || || || || || ||||| || | Sbjct 47239 TTTGTTGGTCAGGTGGAATACCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGG 47180 Query 172006 TATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCT 172065 | || || || || ||||| | |||||||| ||||||||||| || || | ||| || | Sbjct 47179 TGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTACCAGTTAAAGTCTTGACGAAAATTT 47120 Query 172066 GCATTTT 172072 ||||||| Sbjct 47119 GCATTTT 47113 >seq2 Length=3116340 Score = 122 bits (134), Expect = 2e-22 Identities = 356/542 (66%), Gaps = 15/542 (3%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| ||| ||| | || ||||| ||||| || || || |||| || || Sbjct 2726149 TTTTGGTAGTCACTGACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCTAAGGAGATGTTC 2726208 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATA-ATATTTTTCT--CCTATCAATACATAT 38948 | ||| || || ||||| || || || || | || || | || ||| || Sbjct 2726209 TCCATGAAGTCGAATGGGTTGGTGACGTTGTAGACCTTCTTGTTGCC---CAAAGCAATC 2726265 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 |||||||| ||||| || || || || ||||| |||| ||||| ||||| || ||| Sbjct 2726266 AATAATCTGTCGGCAACGAACTCGACGTATTGACACATCAATTCGGCGTTCATTCCTAAT 2726325 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || || ||| || |||||| | ||||||| || || | ||||||| |||| Sbjct 2726326 AAGGAAACTGGCAAAGCATCAGTGAAGAATTCTTGCTCGATCTTGACAGCTTCAGTAATG 2726385 Query 39069 atcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACAT 39128 ||| | | | || | | | | | || | ||| | | | ||||| Sbjct 2726386 ATCTTCTCAACAATAACTGGGTCTGGTCTGTTTTGCAAGTGA---GAGAACAACAAACAG 2726442 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 || || || || |||||||||||||| ||| | || ||||| || ||||| || ||| Sbjct 2726443 GCGAAGTCGGTGTGTAAACCTTCGTCTCTACAGATCAATTCGTTGGAGAAAGTCAAACCT 2726502 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTACTAGAAAAGAAT 39245 |||||||| |||||||| || | ||| || || || || | | | ||| |||| || Sbjct 2726503 GGCATTAAACCTCTCTTCTTCAACCAGAAGATAGAAGCGAAGGATCCACT-GAAA--AAG 2726559 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA 39305 |||||||| ||| || || |||| || ||| | || |||| || ||| || | Sbjct 2726560 ATACCCTCAACAGCAGCGAAAGCTACTAATCTCTCACCGAACAAGGCTTCATCGTCAGAG 2726619 Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 39365 ||||| | | |||||| || || || ||| ||||| | || || || || || || || Sbjct 2726620 ATCCATCTCAAGGCCCAGTCAGCCTTCTTTCTGATACATGGAATGTTGTCGATGGCGTTG 2726679 Query 39366 AA 39367 || Sbjct 2726680 AA 2726681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135886858000