Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7 114 4e-20 seq2 111 5e-19 seq3 98.7 3e-15 seq1 86.0 2e-11 seq5 84.2 6e-11 >seq7 Length=1466551 Score = 114 bits (126), Expect = 4e-20 Identities = 120/157 (76%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | || ||| |||||||| ||| ||||| |||||||| ||||| ||| Sbjct 83716 AGAATTTCCTTAAGACGAGGAACACCCAAGGTAACGTT---CTTGGACGACACACCCGCA 83772 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 | ||||||||||||| || | |||||||| ||| ||||| || || || ||||| Sbjct 83773 TAATGGAAAGTATTCAACGTCATTTGAGTAGCTGGTTCACCGATGGACTGGGCAGCAATA 83832 Query 301933 ATACCAACCATTTCTCCTGGTGCTACAATAGACTTCT 301969 | ||| |||||||| || || |||||||||||||| Sbjct 83833 ACACCGACCATTTCACCAGGATGTACAATAGACTTCT 83869 Score = 107 bits (118), Expect = 6e-18 Identities = 225/329 (68%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 302491 TCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTA-TTTCTTACGGT 302549 ||||| ||||| || |||||| | | |||||||| | | | | | ||||| || Sbjct 84412 TCAATACCGTCTTCACCGTAGACAAATTGAATGATGTC-TCCAAGGGAGTTTCTCGTAGT 84470 Query 302550 CATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACC 302609 ||| || || ||| || ||||||| | || | |||||||| ||||||||||| Sbjct 84471 ACCATCGTAGTGAACCATGATATCTTCCAAAGCTTTAACCAAACGACGTTGAATATAACC 84530 Query 302610 AGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAA 302669 |||| | || || || |||||||| || ||||| | | ||| ||||||| ||||| Sbjct 84531 AGTTTCTGCGGTCTTCACGGCTGTATCGATAAGACCTTCTCTACCGGCCATAGCGTGGAA 84590 Query 302670 GAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCC 302727 ||| | ||||| | ||| | || | ||| | ||| ||||||||||||| | Sbjct 84591 GAAAAACTCTTGTGGAGTC-AATCCTCTCAA-GTATGAGTTCTCAACGAAACCCTTGGAT 84648 Query 302728 TCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGG 302787 || || || | ||| ||| || || ||||||| || |||| || | || |||| Sbjct 84649 TCTGGAGAGTAGTCATCCTTTGTGAAATGTGGCAAAGTTCTGTCTGCAAAACCAAATGGA 84708 Query 302788 ATACGCTTTCCATCAACGTTCTGCTGTCC 302816 |||||||| || ||||| |||| || || Sbjct 84709 ATACGCTTACCTTCAACAATCTGTTGACC 84737 >seq2 Length=3116340 Score = 111 bits (122), Expect = 5e-19 Identities = 242/360 (67%), Gaps = 2/360 (1%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || ||||| || || || || | |||||| ||||||||||||| | ||| ||||| ||| Sbjct 2774701 TTACCACCTTGGTCAACGTATCTAGCAGTATTATTGAAGACACGAACCATTGGAATGATA 2774760 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 || ||||| || || || || || ||| | | ||||| || |||| || || || Sbjct 2774761 CCGTTGGATGTACCGTTAGTACCAGCAATGTAGGCACCAGTAGAACGAATGTTGTGGATG 2774820 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 |||| ||||||||||| | | || ||||| || || ||||| ||| | | || Sbjct 2774821 TGTAAACCAATACCACCAGCACTCTTGGAAATCAAGGCACAGGTCTTTAAAGTGTCGTAA 2774880 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 || || |||||||| || || | ||| | | || | || ||| | ||| || | Sbjct 2774881 ATTCCGTCAATAGAGTCGTCCTTCATGGCGACAAGGAAACAAGAAGACATTTGTGGAGAT 2774940 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAAT-AAAATACTTATTAGACATATA 156358 || || ||||||||||| | || || | | ||| | || | || | | ||||| | Sbjct 2774941 GGGGTACCAGCGTTGAACAAAGTTGGAGAACCGTGAGTGAAGAAACGT-TGGGACATCAA 2774999 Query 156359 ATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCAT 156418 | ||| | || | | |||||| | || | ||||| |||| ||||| || ||||| Sbjct 2775000 GTTGTAAGATTCAATGACCTTCTCGATATCATCACCGTGGATACCAATAGAAACTCTCAT 2775059 >seq3 Length=2759450 Score = 98.7 bits (108), Expect = 3e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 251412 ACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTT 251471 ||||||| | || |||||||| ||| |||||||||| || || | || |||| Sbjct 183063 ACCACACATTCCGCAGACATGGACTCTGAAAGCATCAGAGGCTTCCATCAAACGTTCCTT 183004 Query 251472 GGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAG 251531 ||| | | |||||||| | ||||||||||||||||||||| ||||||||||| | Sbjct 183003 CAAGAAACCGGCAGCACCGTGCGCAATCATACAATCACGCTCCATCTCACCGAAACGTAA 182944 Query 251532 ACCACCATCGCGAGCCCTACCCTC 251555 ||||||||| | || ||||| || Sbjct 182943 ACCACCATCTCTAGATCTACCTTC 182920 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 ||||||||| ||||||||||||||||| ||||| ||||| | ||| | ||||||||| | Sbjct 182991 AGCACCGTGCGCAATCATACAATCACGCTCCATCTCACCGAAACGTAAACCACCATCTCT 182932 Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTAAAAC 233364 || ||||| | |||| ||| | ||| ||||| Sbjct 182931 AGATCTACCTTCCACTGGTTGTCTAGTCAAAAC 182899 Score = 84.2 bits (92), Expect = 6e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 252505 GGGTAAGATAGAACATATGCTGTCTTATCCATCCTATTATCATAATTTGTAACATACATA 252564 ||||| ||| || || ||| | ||||||| || |||||| || | ||| | Sbjct 181958 GGGTAGTATAAAATATTTGCCATGGTATCCATTCTCACGGAATAATTGGTCAAGAACACA 181899 Query 252565 CCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCC 252624 || | || ||||| ||||||||| || || ||||| | |||||| ||||||| || Sbjct 181898 CCCATAGCTTGCTTACCCATAGCAGATTGATATGTATTACGGGGAGATTGATTGTGATCT 181839 Query 252625 GGGAAAGGAATGCATGATGCTACAACACCGAAGATAGTGCTTGGGTGAATTTCACAGTG 252683 |||||||||||| || ||| ||||||| | ||| | || || || || ||||| || Sbjct 181838 GGGAAAGGAATGATAGAAGCTGCAACACCAAGGATCATACTAGGATGGATCTCACAATG 181780 >seq1 Length=3488706 Score = 86.0 bits (94), Expect = 2e-11 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||||| ||||||||||||||| | |||| | | |||| ||||| | ||| | Sbjct 1561106 TTACCAATAGCATCAATTTCGTCTACAAAAACAATGGAAGGAGCATTTTCACGTGCAGTC 1561047 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 || || || | || | |||||| |||| ||||||| ||||||| || ||||||||| Sbjct 1561046 TTGAACAAGTCACGGACTCTGGATGCACCAACACCAACAAACATTTCGACGAATTCAGAA 1560987 Query 289147 GCGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || || || | ||||| ||| ||||| || ||| || || || | | || Sbjct 1560986 CCAGAAAC-AGAGTAGAATGGAACACCGGCTTCACCAGCTGTAGCTCTAGCGATCAAGGT 1560928 Query 289206 CTTACCTGTTCCAGGTGGTCC 289226 |||||| || || || ||||| Sbjct 1560927 CTTACCAGTACCTGGGGGTCC 1560907 >seq5 Length=1751141 Score = 84.2 bits (92), Expect = 6e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||| ||||||| |||||||||||||||| ||| || | | | |||| | | ||| Sbjct 207102 CTTTCCTTACCAATTGCATCAATTTCGTCAACGAAGATAATAGAAGGAGCCATGTCTCTT 207161 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || || |||||| || | || | ||||| || | ||| ||| ||||||| || ||| Sbjct 207162 GCGGTTTTAAATAAATCACGGACTCTTGATGCACCTACACCGACAAACATTTCAACGAAT 207221 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || ||| | ||||| | ||| | ||| ||| || || ||| || | || | | Sbjct 207222 TCGGAACCTGATACCGATAAGAAAGGAACACCTGCCTCACCAGCTGTAGCTTTGGCTAAA 207281 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCC 289226 || |||||||| || || || || || Sbjct 207282 AGGGTCTTACCGGTACCTGGAGGACC 207307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817411423370