Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 1e-13 seq7 91.5 3e-13 seq1 89.7 1e-12 >seq2 Length=3116340 Score = 93.3 bits (102), Expect = 1e-13 Identities = 320/496 (65%), Gaps = 5/496 (1%) Strand=Plus/Minus Query 110510 ACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGA 110569 |||| || ||||||| || ||| | | || || || || |||||||| || ||||| || Sbjct 2774934 ACAAATGTCTTCTTGTTTCCTTGTCGCCATGAAGGACGACTCTATTGACGGAATTTACGA 2774875 Query 110570 TGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTC 110628 || ||||||| ||| | ||||| || | |||| || |||||| | ||| | | Sbjct 2774874 CACT-TTAAAGACCTGTGCCTTGATTTCCAAGAGTGCTGGTGGTATTGGTTTACACATCC 2774816 Query 110629 ATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTG 110688 | | ||||| || | || || | || || | || ||| | || | || | Sbjct 2774815 ACAACATTCGTTCTACTGGTGCCTACATTGCTGGTACTAACGGTACATCCAACGGTATCA 2774756 Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGA 110745 |||||||| | | |||||||| | ||||| | ||| || | ||||||||| ||| Sbjct 2774755 TTCCAATGGTTCGTGTCTTCAATAATACTGCTAGATACGTTGACCAAGGTGGTAACAAGC 2774696 Query 110746 GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 | || | ||||| | || | ||||| ||||| |||| || || || ||| | | Sbjct 2774695 GTCCAGGTGCTTTTGCCTTATACTTGGAACCATGGCACGCAGACATTTTCGACTTCATTG 2774636 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 | | | || || || || ||||| ||||| | ||||| || || ||| Sbjct 2774635 ATATCAGAAAGAACCACGGTAAGGAAGAGATTAGAGCTAGAGATTTGTTCCCAGCTTTGT 2774576 Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTC 110925 ||||| |||| || |||||||| | || || |||| || ||| ||||| | | || Sbjct 2774575 GGATTCCAGACTTGTTCATGAAGAGAGTCGAACAAAACGGTGATTGGACTCTTTTCTCTC 2774516 Query 110926 CTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAA 110985 | | |||| || | | || ||||| || | || || ||||| | |||||| Sbjct 2774515 CAAACGAAGCTCCAGGCTTGCCAGAAGTATACGGTGACGAATTCGAAGAGTTGTACGAAC 2774456 Query 110986 AATATGAAAAAGAAGG 111001 || || | |||||| Sbjct 2774455 GTTACGAGAGAGAAGG 2774440 >seq7 Length=1466551 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 305322 ATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATA 305381 ||||| ||||| || || | |||||||| |||| || ||| |||||||||||| | Sbjct 85717 ATGATCCTGTTCTTTTTAACCGTCAACCATCTTTGCACAAGATGAGTATGATGGCTCACA 85658 Query 305382 AAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATA 305441 |||||| || | || | || || |||||||| | || | | | || |||| Sbjct 85657 GAGTCAAGGTTATGCCTTACTCCACTTTCAGATTAAATTTGTCTGTTACTTCTCCATATA 85598 Query 305442 ATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTACAATGA 305501 |||| ||||| ||||| ||||||||||| | ||||| || ||||| | || | | Sbjct 85597 ATGCCGATTTCGATGGTGATGAAATGAACTTACATGTGCCGCAATCCCCTGAAACCAGGG 85538 Query 305502 CTGAATTATCAGAAATATGTTCTGT 305526 | || || || ||||| ||| |||| Sbjct 85537 CCGAGTTGTCTGAAATCTGTGCTGT 85513 >seq1 Length=3488706 Score = 89.7 bits (98), Expect = 1e-12 Identities = 325/497 (65%), Gaps = 15/497 (3%) Strand=Plus/Plus Query 110514 TTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTAT--GATG 110571 ||| | || |||||| | ||| || | || || || ||||| || || || || | Sbjct 3154702 TTGTCGTCGTGCTTTTTGATAGCCATGGAAGACGACTCCATTGATGGAATCTACAAGACG 3154761 Query 110572 CTCT-TAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 ||| ||||| | ||| | ||||| || || || || ||||| | || || || Sbjct 3154762 CTCCATAAAGCA---GCTTTAATTTCCAAGGCATCAGGGGGTATTGGCTTACATGTACAC 3154818 Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTT 110690 |||| | | | ||||| |||| || | | || ||| | | | ||| | || Sbjct 3154819 AATATAAGAGGACATGGAGCCCATATAGCCAGTACCAATGGTACAGCCAGTGGGTTGGTG 3154878 Query 110691 CCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAAT 110750 || ||| | | ||| || || ||||| || | ||||||| ||||||| || || | || Sbjct 3154879 CCTATGCTTAAAGTATTTAATGACACAGCTAGATATGTGGATCAAGGAGGGAACAAAAGA 3154938 Query 110751 ---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAA 110807 || | |||||||| ||| | || || |||||||| || | |||||| |||| || Sbjct 3154939 CCAGGAGCTTTTGCTATATATTTAGAGCCATGGCATTCTGACGTCTTTGAAATCTTGGAT 3154998 Query 110808 CTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGG 110867 | || || || || || || | || | || ||||| |||| || | ||| Sbjct 3154999 TTGAAGAAGAACCACGGCAAAGAGGAGCTCAGGACGCGAGATTTGTTTTTTGGTCTATGG 3155058 Query 110868 ATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATG-GCATGTGGTCTCTTATGTGTCC 110926 ||| | |||||||||||| | | || || | |||| | || ||||| ||||| | ||| Sbjct 3155059 ATTCCGGATTTATTCATGGAGAGGGTCAAAAACAATGAGGAT-TGGTC-CTTAT-TTTCC 3155115 Query 110927 TCA-TCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAA 110984 || || |||| || | | ||| || ||| ||||||||| || || ||| | Sbjct 3155116 CCAGACGAAGCTCCAGGATTGGCAGATTGTTACGGAGAAGAGTTTGTTGAACTATACAAG 3155175 Query 110985 AAATATGAAAAAGAAGG 111001 ||||| || ||||| || Sbjct 3155176 AAATACGAGAAAGAGGG 3155192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812647939610