Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq8 165 2e-35 seq6 143 6e-29 seq2 105 2e-17 >seq8 Length=506948 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | |||||||||||| || ||||||||||| || || | ||| || || || Sbjct 221957 TCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTACC 221898 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| || |||||||| | ||||||||||| || |||| |||||||| Sbjct 221897 GTCTTCCAATTGCTTACCAGCGAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTT 221838 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || ||||| || ||||||||||| ||| || || ||||| || Sbjct 221837 GTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCGACTTCAAGAGTAAT 221778 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| || || | ||||| Sbjct 221777 AGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 221742 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | |||||||||||| || ||||||||||| || || | | ||| || || Sbjct 222185 TCTTAATACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTGCC 222126 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| || || ||||| | | ||||||||| || |||| |||||||| Sbjct 222125 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTT 222066 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || ||||| || ||||||||||| |||||| || ||||| || Sbjct 222065 GTCTTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAAGATTCAACTTCAAGAGTAAT 222006 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| || || | ||||| Sbjct 222005 AGTCTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 221970 Score = 156 bits (172), Expect = 1e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||||||||| || ||||||||||| || || | ||| || || || ||||||| || Sbjct 222629 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTG 222570 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | | ||||||||| || |||| ||||||||||| |||||||| Sbjct 222569 CTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTT 222510 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || || ||||||||| ||||| ||||| ||||| ||||| || || Sbjct 222509 GGACTTAACGTTGTCAATAGTGTCAGAGGACTCAACTTCGAGGGTGATAGTCTTACCGGT 222450 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | |||||| || || | ||||| Sbjct 222449 CAAAGTCTTGACGAAAATTTGCAT 222426 Score = 149 bits (164), Expect = 1e-30 Identities = 167/222 (75%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | |||||||||||| || ||||||||||| || || | ||| || || || Sbjct 221729 TCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTACC 221670 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| || |||||||| | ||||||||||| || |||| |||||||| Sbjct 221669 GTCTTCCAATTGCTTACCAGCGAAGATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTT 221610 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || |||||||| || ||||| || || |||||||| |||||| || | || || Sbjct 221609 ATCTTGGATCTTGGACTTGACGTTGTCAATAGTGTCAGAAGATTCAACTTCCAAGGTAAT 221550 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT-TTTAT 211119 ||||| || || | ||||| || || | ||||| ||||| Sbjct 221549 GGTCTTACCGGTCAATGTCTTAACGAAGATTTGCATGTTTAT 221508 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| || | |||||||||||| || ||||||||||| || || | | ||| || || Sbjct 222413 TCTTAAAACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTGCC 222354 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | ||||| || ||||| || | | ||||||||| || |||| |||||||| Sbjct 222353 GTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTT 222294 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || ||||| || || ||||||||| || || || ||||| || Sbjct 222293 GTCTTGGATCTTGGACTTAACGTTGTCAATAGTGTCAGAGGACTCGACTTCAAGAGTAAT 222234 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| || || | ||||| Sbjct 222233 AGTCTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 222198 >seq6 Length=1682205 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | ||| | ||||| || || |||||||| || || | ||| || || || Sbjct 47331 TCTTAAGACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACC 47272 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| |||||| || |||||||| | | |||||||||||| |||| |||||||| Sbjct 47271 GTCTTCCAACTGCTTACCAGCGAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 47212 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||| ||||| || || || || |||||||| ||| || || || | || || Sbjct 47211 GTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 47152 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | |||||| || || | |||||||| Sbjct 47151 GGTCTTACCAGTTAAAGTCTTGACGAAAATTTGCATTTT 47113 >seq2 Length=3116340 Score = 105 bits (116), Expect = 2e-17 Identities = 237/356 (67%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 178085 ATTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 || || ||||||||||||||| |||| || | ||| || |||||| ||||| || Sbjct 2774308 ATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTACAGGCGTCCTTGTACAACATGAAAGGA 2774367 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || ||||| || ||| | | |||| | ||| | || ||||| |||||| Sbjct 2774368 GTACCGGTCTCAGTCTGGGCCTCCAAAATGGCGTACCACAACTTTTGGGCCTTGACAGTG 2774427 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 ||| | || | ||||| ||||||| || ||| | ||| |||||||| || || Sbjct 2774428 TTTCTTCCTCTACCTTCTCTCTCGTAACGTTCGTACAACTCTTCGAATTCGTCACCGTAT 2774487 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 || || | || ||||| || || || |||| ||| |||| | ||||| || | Sbjct 2774488 ACTTCTGGCAAGCCTGGAGCTTCGTTTGGAGAGAAAAGAGTCCAATCACCGTTTTGTTCG 2774547 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGCTCTCATC 178384 |||| |||||||| | ||| | |||| | || ||| | ||||| ||||| ||| Sbjct 2774548 ACTCTCTTCATGAACAAGTCTGGAATCCACAAAGCTGGGAACAAATCTCTAGCTCTAATC 2774607 Query 178385 AGGTCATTTCCTCCGGGTTTTCTGGCATCAACAAAGTCAAAAATGTCCACATGCCA 178440 || || || | |||||| ||||| ||||| |||||||| | ||||| Sbjct 2774608 TCTTCCTTACCGTGGTTCTTTCTGATATCAATGAAGTCGAAAATGTCTGCGTGCCA 2774663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151851483650